; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg12967 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12967
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase III subunit RPC4
Genome locationCarg_Chr10:3503910..3507107
RNA-Seq ExpressionCarg12967
SyntenyCarg12967
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domainsIPR007811 - DNA-directed RNA polymerase III subunit RPC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590029.1 DNA-directed RNA polymerase III subunit RPC4, partial [Cucurbita argyrosperma subsp. sororia]1.2e-157100Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
Subjt:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

XP_022961283.1 uncharacterized protein LOC111461827 [Cucurbita moschata]1.5e-15598.96Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDE TTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQDVAAINVEGKYCC IGELSKRAILTPDVESMLKNIEDL
Subjt:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

XP_022988288.1 uncharacterized protein LOC111485583 [Cucurbita maxima]1.9e-15598.27Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNE+TLRARQRIGKKAAPTQVAFGSGGTS+TIRSFGISKAGNRLGNEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        SLPSTTSKEYVEPWDYYSYYPVTLP+RSPYSGNPDSLNEEEFGEGSETLSYDE TTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKN+EDL
Subjt:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

XP_023515454.1 uncharacterized protein LOC111779607 [Cucurbita pepo subsp. pepo]3.0e-15698.96Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        SLPSTTSKEYVEPWDYYSYYPVTLP+RSPYSGNPDSLNEEEFGEGSETLSYDE TTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKN+EDL
Subjt:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

XP_038878504.1 uncharacterized protein LOC120070724 [Benincasa hispida]2.1e-13383.96Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        ME D  KN TA  RK+KFAPKAP RRIPKPEVK EIAEDADAAQARDLLKRFNE+TLR +Q+IG+KAAPTQVAFGSGGTSST+RS+G+SKAGNR  NEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        +LPS+TSKEYVEPWDYYSYYPVTLP+R PYSGNPDSLNEEEFGE SE  +YDE TTTPA+DLGLLEENPE D+FFLQLPPMVP++KQSSTVEG GAANS 
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        E    SQPRQK C MNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQDVAA+NVEGK CCI+GELSKRAILTPDV+S+LKNIEDL
Subjt:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

TrEMBL top hitse value%identityAlignment
A0A0A0LWX7 Uncharacterized protein1.4e-13081.91Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        ME +  KN TA  RK+KFAPKAP RRIPKPEVK E+AEDADAAQARDLLKRFNE+T RA+QR+G+KAAPTQVAFGSGG+SST+RS+G+SKAGNR  NEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        +LP++TSKEYVEPWDYYSYYPVTLP+R PYSGNPDSLNEEEFGE SE L+YDE TTT A++LGLLEENPE D+ FLQLPPMVP+IKQSS+VE +G+ NSS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        E    SQPRQKTCSMNELPSGS+GKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQ+VAAINVEGK CCI+GELSKRAILTPDV+SMLKNIEDL
Subjt:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

A0A1S3BPR1 DNA-directed RNA polymerase III subunit RPC48.9e-13081.23Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        ME D  KN TA  RK+KFAPKAP RR+PKPEVK E+AED DAAQARDLLKRFNE+T RA+QR+G+KAAPTQVAFGSGG+SST+RS+G+SKAGNR  NEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        +LP++TSKEYVEPWDYYSYYPVTLP+R PYSGNPDSLNEEEFGE SE  +YDE TTT A++LGLLEENPETD+FFLQLPPMVP+IKQSSTVE +G+ N S
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        E    SQ RQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQ+VAAIN+EGK+CCI+GELSKRAILTPDV+SML+NIEDL
Subjt:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

A0A6J1D2P1 DNA-directed RNA polymerase III subunit rpc42.6e-12980.89Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        ME D  KN+T  QRKMKFAPKAPPRR+PKPEVK EI E+ADAAQA+DLLKRFNE+T+RA+Q++GKKAAPTQVAFGSGGTS+TIRS+GI KAGNR  NEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        +LPS+ SKEYVEPWDYYSYYPVTLP+R PYSG+PDSLNEEEFGE SE  +YDE+ TTPA+DLGLLEENPET++FFLQ+PPMVPV KQSSTVEG+ AA+SS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        E    S+ RQ  CS+NELPSGSMGKLLVYRSGAVKLKLGDI+YDVSSGM CGFAQDVAAINVEGK+CCI+GELSKRAILTPDV+SMLK+IEDL
Subjt:  E----SQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

A0A6J1HBC9 uncharacterized protein LOC1114618277.2e-15698.96Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDE TTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGM CGFAQDVAAINVEGKYCC IGELSKRAILTPDVESMLKNIEDL
Subjt:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

A0A6J1JLT3 uncharacterized protein LOC1114855839.4e-15698.27Show/hide
Query:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG
        MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNE+TLRARQRIGKKAAPTQVAFGSGGTS+TIRSFGISKAGNRLGNEDG
Subjt:  MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDG

Query:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
        SLPSTTSKEYVEPWDYYSYYPVTLP+RSPYSGNPDSLNEEEFGEGSETLSYDE TTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS
Subjt:  SLPSTTSKEYVEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSS

Query:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKN+EDL
Subjt:  ESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL

SwissProt top hitse value%identityAlignment
P05423 DNA-directed RNA polymerase III subunit RPC42.2e-0827.48Show/hide
Query:  ETDIFFLQLPPMVP--------------VIKQSSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAA
        E ++ FLQLP  +P              V  +   V  I      E++  +  C++ +L  G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ +
Subjt:  ETDIFFLQLPPMVP--------------VIKQSSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAA

Query:  INVEGK---YCCIIGELSKRAILTPDVESML
        + +         ++G +  + + +PD ES+L
Subjt:  INVEGK---YCCIIGELSKRAILTPDVESML

P25441 DNA-directed RNA polymerase III subunit RPC48.6e-0524.22Show/hide
Query:  LEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSESQPRQK-----------TCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDV
        +   PE  + F QLP  +P  ++ +  E      +  S P +K             S  EL +G +G + V++SG + +K+G+++ D+  G    F QDV
Subjt:  LEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSESQPRQK-----------TCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDV

Query:  AAINV--EGKYCCIIGELSKRAILTPDV
         A+++  +     ++G +  + ++TP +
Subjt:  AAINV--EGKYCCIIGELSKRAILTPDV

Q5E9Z7 DNA-directed RNA polymerase III subunit RPC41.7e-0826.72Show/hide
Query:  ETDIFFLQLPPMVP--------------VIKQSSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAA
        E ++ FLQLP  +P              V  +   +  I      E++  + TC++ +L  G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ +
Subjt:  ETDIFFLQLPPMVP--------------VIKQSSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAA

Query:  INVEGKY---CCIIGELSKRAILTPDVESML
        + +         ++G +  + + +P+ ES+L
Subjt:  INVEGKY---CCIIGELSKRAILTPDVESML

Q8T1V7 DNA-directed RNA polymerase III subunit rpc45.0e-0527.61Show/hide
Query:  TTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDV
        TTT P  +   +E+ P      L     VPVI                  P     S+ E+PSG +G L +Y+SG   LK+G + YD+SSG    F ++V
Subjt:  TTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDV

Query:  AAINVEG-----KYCCIIGELSKRAILTPDVESM
             +G       C  +G  S+  +  P +  +
Subjt:  AAINVEG-----KYCCIIGELSKRAILTPDVESM

Q91WD1 DNA-directed RNA polymerase III subunit RPC44.8e-0826.72Show/hide
Query:  ETDIFFLQLPPMVP-------VIKQSSTVEG-------IGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAA
        + ++ FLQLP  +P       +    + V+G       I      E++  +  C++ +L  G +GKLL+ +SG V+L LG +  DV+ G  C F Q++ +
Subjt:  ETDIFFLQLPPMVP-------VIKQSSTVEG-------IGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAA

Query:  INVEGK---YCCIIGELSKRAILTPDVESML
        + +         ++G +  + + +PD ES+L
Subjt:  INVEGK---YCCIIGELSKRAILTPDVESML

Arabidopsis top hitse value%identityAlignment
AT4G25180.1 RNA polymerase III RPC42.7e-3835.06Show/hide
Query:  QRKMKFAPKAPPRRIP-KPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISK---------------------
        +R+ +  P  P RR+P  P    E  ED +  +A    ++F+   +  R +   KA+  +VAF    +   IRSFG+ K                     
Subjt:  QRKMKFAPKAPPRRIP-KPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISK---------------------

Query:  ----AGNRLGNEDGSLPSTTSKEYVEPWDY-YSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLE-ENPETDIFFLQLPPMVPV
            A    G E  +  + T  +YVEPWDY  SYYP  LP+R P SG+ + L++EEFGE ++   YDE T   A +LGL   ++ +  +F  ++P  +PV
Subjt:  ----AGNRLGNEDGSLPSTTSKEYVEPWDY-YSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLE-ENPETDIFFLQLPPMVPV

Query:  IKQ---SSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVES
        +KQ   ++T   +   +S  S P         LP G MGK+LVY+SGAVKLK+GD ++DVS G       DV AI+++G+ C  IG  +K   +TPDVES
Subjt:  IKQ---SSTVEGIGAANSSESQPRQKTCSMNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVES

Query:  MLKNIEDL
        +L    D+
Subjt:  MLKNIEDL

AT5G09380.1 RNA polymerase III RPC42.1e-6246.59Show/hide
Query:  RKMKFAPKAPPRRIPKPEVKEEIAED-ADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDGSLPSTTSK--EY
        RKMKFAPKAPP+R+PKPEVK E+ ED +++AQA +LL+R NE +LR + +  KK   +QVA+  G  +ST       ++   L   +G+  ST+++  EY
Subjt:  RKMKFAPKAPPRRIPKPEVKEEIAED-ADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDGSLPSTTSK--EY

Query:  VEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSESQPRQKTCS
         EPWDYYSYYP+TLPMR PY+G+P+ L+ EEF +      + E +   A +LGL+E++ E  +FF++L P VP+   S+  E +    + +    +KT  
Subjt:  VEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSESQPRQKTCS

Query:  MNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL
        +  LP G MGKLLVY+SGAVK+KLG+++YDVS G+   FAQDV  +N E K CC++G++ K A+LTPD++S+LK+IE++
Subjt:  MNELPSGSMGKLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATGATCTGCTCAAAAACAGTACAGCTGGTCAAAGGAAGATGAAATTTGCTCCAAAAGCACCTCCTCGTCGTATACCAAAACCTGAAGTCAAAGAAGAAATAGC
AGAGGACGCTGATGCTGCTCAAGCCAGGGATTTACTTAAACGCTTCAATGAAACCACCCTAAGGGCAAGGCAAAGAATTGGGAAAAAAGCGGCACCTACACAAGTTGCAT
TTGGTTCTGGAGGTACATCAAGCACCATAAGATCATTTGGTATTTCAAAAGCTGGAAATAGACTCGGAAATGAAGATGGATCACTTCCGTCTACTACGAGTAAGGAGTAT
GTAGAACCATGGGATTATTACAGTTATTATCCTGTAACTCTTCCTATGCGGAGTCCATATTCAGGAAATCCAGATTCTCTTAACGAGGAAGAATTTGGAGAGGGTTCAGA
AACCTTAAGCTATGATGAAACAACAACAACTCCAGCAGTGGATCTTGGTCTATTGGAGGAGAATCCAGAAACAGACATATTTTTTCTGCAATTACCACCTATGGTGCCTG
TGATAAAGCAATCCTCTACTGTAGAAGGGATTGGAGCAGCCAACAGCTCAGAATCACAACCTAGACAGAAAACCTGCTCTATGAATGAGTTACCTTCTGGCTCCATGGGT
AAATTGCTCGTGTATAGGAGCGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGCATTGTGGTTTTGCACAAGATGTTGCAGCTATCAA
TGTGGAAGGAAAGTATTGCTGCATCATTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGAGTCAATGTTAAAGAACATAGAGGATTTATAA
mRNA sequenceShow/hide mRNA sequence
TAGCTCAAAAATATTGTCGTGTAATGTTTTTCCCTAGCATGCTCGAAGCTTCTGATTGAAGCAAAATGATCCCTAAATGAAAACTTCGTCCACATAAGAGTTCACGGCTG
AAGTAGTGAAGTTTATGGATCGAATTTCAAGTGGCATTTGAGAATGGAAACAATATCCTTCATTCTTCCTCATGGACGATATTATTCTAATTATAGTGTTATCCTAGTTG
CATTCACTGTGCAATTTAATTAGGTCGACAAAGCCATTTTAAGATAAAGACGTGATAAGACTTGGGAATTTGACAACTAATTGTAAGTGATCATTATTTTTTCTTTTCAG
TTTTGGACGAAGATTTGACTACTAATAGCCATGGAGAATGATCTGCTCAAAAACAGTACAGCTGGTCAAAGGAAGATGAAATTTGCTCCAAAAGCACCTCCTCGTCGTAT
ACCAAAACCTGAAGTCAAAGAAGAAATAGCAGAGGACGCTGATGCTGCTCAAGCCAGGGATTTACTTAAACGCTTCAATGAAACCACCCTAAGGGCAAGGCAAAGAATTG
GGAAAAAAGCGGCACCTACACAAGTTGCATTTGGTTCTGGAGGTACATCAAGCACCATAAGATCATTTGGTATTTCAAAAGCTGGAAATAGACTCGGAAATGAAGATGGA
TCACTTCCGTCTACTACGAGTAAGGAGTATGTAGAACCATGGGATTATTACAGTTATTATCCTGTAACTCTTCCTATGCGGAGTCCATATTCAGGAAATCCAGATTCTCT
TAACGAGGAAGAATTTGGAGAGGGTTCAGAAACCTTAAGCTATGATGAAACAACAACAACTCCAGCAGTGGATCTTGGTCTATTGGAGGAGAATCCAGAAACAGACATAT
TTTTTCTGCAATTACCACCTATGGTGCCTGTGATAAAGCAATCCTCTACTGTAGAAGGGATTGGAGCAGCCAACAGCTCAGAATCACAACCTAGACAGAAAACCTGCTCT
ATGAATGAGTTACCTTCTGGCTCCATGGGTAAATTGCTCGTGTATAGGAGCGGTGCTGTCAAGTTAAAGCTTGGTGATATTATATATGATGTTTCTTCTGGAATGCATTG
TGGTTTTGCACAAGATGTTGCAGCTATCAATGTGGAAGGAAAGTATTGCTGCATCATTGGGGAGCTTAGCAAGCGTGCCATTTTAACACCAGACGTGGAGTCAATGTTAA
AGAACATAGAGGATTTATAATTATTTTCTCTGAAGGCGGGGTTTTTCCCTAGACATCAATGTAGAGATATTGACGAGAGTGATATTCTTCATCAAAGCTCCAAGTGGATA
TAACATCAAACGATATCAGCAGAAA
Protein sequenceShow/hide protein sequence
MENDLLKNSTAGQRKMKFAPKAPPRRIPKPEVKEEIAEDADAAQARDLLKRFNETTLRARQRIGKKAAPTQVAFGSGGTSSTIRSFGISKAGNRLGNEDGSLPSTTSKEY
VEPWDYYSYYPVTLPMRSPYSGNPDSLNEEEFGEGSETLSYDETTTTPAVDLGLLEENPETDIFFLQLPPMVPVIKQSSTVEGIGAANSSESQPRQKTCSMNELPSGSMG
KLLVYRSGAVKLKLGDIIYDVSSGMHCGFAQDVAAINVEGKYCCIIGELSKRAILTPDVESMLKNIEDL