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Carg12969 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg12969
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein ELF4-LIKE
Genome locationCarg_Chr10:3492635..3492979
RNA-Seq ExpressionCarg12969
SyntenyCarg12969
Gene Ontology termsGO:0009649 - entrainment of circadian clock (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0005634 - nucleus (cellular component)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7021961.1 Protein ELF4-LIKE 4 [Cucurbita argyrosperma subsp. argyrosperma]2.5e-5096.46Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_004144022.1 protein ELF4-LIKE 4 [Cucumis sativus]3.0e-5198.25Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSS QID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

XP_022147541.1 protein ELF4-LIKE 4 [Momordica charantia]7.6e-4793.75Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGS AQID KILQ FQKNFVQVQ+ILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLS +FTRS+EVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNR
        KSDGKAGQKRNR
Subjt:  KSDGKAGQKRNR

XP_022933909.1 protein ELF4-LIKE 4-like [Cucurbita moschata]2.5e-5096.46Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSG+GS+AQID+KILQTF KNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKAGQKRNRA
Subjt:  KSDGKAGQKRNRA

XP_022961237.1 protein ELF4-LIKE 4-like [Cucurbita moschata]2.7e-52100Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

TrEMBL top hitse value%identityAlignment
A0A0A0M235 Elf4 domain-containing protein1.5e-5198.25Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSS QID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A1S3BQA6 protein ELF4-LIKE 41.5e-5198.25Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSS QID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A5D3CFE9 Protein ELF4-LIKE 4-like isoform X21.5e-5198.25Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSS QID+KILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A6J1H9N1 protein ELF4-LIKE 4-like1.3e-52100Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

A0A6J1JGF0 protein ELF4-LIKE 4-like1.3e-52100Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRAA
        KSDGKAGQKRNRAA
Subjt:  KSDGKAGQKRNRAA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.0e-1342.17Show/hide
Query:  DTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG
        D  + +   +NF QVQ++LD+N+ LI ++N NH+S++ DN+++NV LI+ELN NI +VV++Y+DL+ SF+        G   G
Subjt:  DTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSG

O80877 Protein ELF4-LIKE 11.5e-1340Show/hide
Query:  EGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS
        E D      S+A  D ++  T    F + Q  LDQN+ LI  +N+NH S+IPDN++RNVGLI E+N NI +V+++Y+DLS +F +  +     + +GD++
Subjt:  EGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS

Q570U6 Protein ELF4-LIKE 49.7e-3771.68Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

Q8S8F5 Protein ELF4-LIKE 32.2e-3376.53Show/hide
Query:  MEGDTFSG-LGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGDT S  +GS  Q+D KILQTF+K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDTFSG-LGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

Q94BS8 Protein ELF4-LIKE 21.6e-3470.18Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD +SG G   Q+D K+LQ FQK+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKA-GQKRNRA
        KSDGKA  QKR R+
Subjt:  KSDGKA-GQKRNRA

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 46.9e-3871.68Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

AT1G17455.2 ELF4-like 46.9e-3871.68Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD  SG G    +D K+LQ+FQK+FV VQ+ILDQN+LLI+EINQNHESK PDNL RNVGLI+ELNNNIRRV  LY DLS SF RS++ SSEG+SSG L
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKAGQKRNRA
        KSDGKA QKR R+
Subjt:  KSDGKAGQKRNRA

AT1G72630.1 ELF4-like 21.1e-3570.18Show/hide
Query:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL
        MEGD +SG G   Q+D K+LQ FQK+FVQVQ+ILDQN+LLI+EINQNHESK  D+L RNVGLIRELNNNIR V  LY DLS SF RS++ SSEG+S+G L
Subjt:  MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGAL

Query:  KSDGKA-GQKRNRA
        KSDGKA  QKR R+
Subjt:  KSDGKA-GQKRNRA

AT2G06255.1 ELF4-like 31.6e-3476.53Show/hide
Query:  MEGDTFSG-LGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS
        MEGDT S  +GS  Q+D KILQTF+K+FVQVQNILD N+LLI+EINQNHESKIPDNL RNVGLIRELNNN+RRV  LY DLS +F++SME SSEGDSS
Subjt:  MEGDTFSG-LGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSS

AT2G29950.1 ELF4-like 11.1e-1440Show/hide
Query:  EGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS
        E D      S+A  D ++  T    F + Q  LDQN+ LI  +N+NH S+IPDN++RNVGLI E+N NI +V+++Y+DLS +F +  +     + +GD++
Subjt:  EGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSME----VSSEGDSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGGCGACACATTTTCAGGGCTTGGGAGTAGTGCACAGATTGATACCAAGATTTTACAGACATTTCAGAAGAATTTTGTTCAAGTTCAAAACATCTTGGATCAAAA
CAAGCTGCTCATCAGCGAGATAAACCAGAATCATGAATCAAAGATCCCTGATAATCTTAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTG
TGGACTTATATGCTGATCTTTCATGTTCCTTCACTAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCTTTGAAATCAGATGGAAAAGCAGGCCAAAAGAGA
AACAGGGCTGCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGGCGACACATTTTCAGGGCTTGGGAGTAGTGCACAGATTGATACCAAGATTTTACAGACATTTCAGAAGAATTTTGTTCAAGTTCAAAACATCTTGGATCAAAA
CAAGCTGCTCATCAGCGAGATAAACCAGAATCATGAATCAAAGATCCCTGATAATCTTAACAGAAATGTGGGTCTGATCCGAGAATTAAACAACAATATCAGGAGGGTTG
TGGACTTATATGCTGATCTTTCATGTTCCTTCACTAGATCCATGGAAGTTTCTTCAGAAGGTGATTCCAGTGGAGCTTTGAAATCAGATGGAAAAGCAGGCCAAAAGAGA
AACAGGGCTGCCTAA
Protein sequenceShow/hide protein sequence
MEGDTFSGLGSSAQIDTKILQTFQKNFVQVQNILDQNKLLISEINQNHESKIPDNLNRNVGLIRELNNNIRRVVDLYADLSCSFTRSMEVSSEGDSSGALKSDGKAGQKR
NRAA