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Carg13028 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13028
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAP complex subunit sigma
Genome locationCarg_Chr10:3144426..3145374
RNA-Seq ExpressionCarg13028
SyntenyCarg13028
Gene Ontology termsGO:0006886 - intracellular protein transport (biological process)
GO:0016192 - vesicle-mediated transport (biological process)
GO:0016020 - membrane (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
InterPro domainsIPR011012 - Longin-like domain superfamily
IPR016635 - Adaptor protein complex, sigma subunit
IPR022775 - AP complex, mu/sigma subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF9680453.1 hypothetical protein SADUNF_Sadunf06G0122700 [Salix dunnii]2.2e-2897.1Show/hide
Query:  LQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        LQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLM+K+S
Subjt:  LQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

KAG6589966.1 ATP-dependent 6-phosphofructokinase 3, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

KAG7023629.1 AP-4 complex subunit sigma, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-29100Show/hide
Query:  MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

XP_004135683.1 AP-4 complex subunit sigma [Cucumis sativus]2.2e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

XP_022144808.1 AP-4 complex subunit sigma [Momordica charantia]2.2e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

TrEMBL top hitse value%identityAlignment
A0A0A0M1T6 AP complex subunit sigma1.1e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A5D3CFV6 AP complex subunit sigma1.1e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A6J1CU99 AP complex subunit sigma1.1e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A6J1HBI1 AP complex subunit sigma1.1e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

A0A6J1JK41 AP complex subunit sigma1.1e-2898.53Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

SwissProt top hitse value%identityAlignment
O82201 AP-4 complex subunit sigma1.6e-2992.54Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS
        +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSPIQLM+K+
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS

Q3ZBB6 AP-4 complex subunit sigma-14.4e-1655.88Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P+ +++K S
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Q9P7N2 AP-1 complex subunit sigma-11.0e-1253.33Show/hide
Query:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI
        NEL ILE IH  VE +D++FGNVCELD++F+ EKA++++EE+++ G + E+SK+N+LS +
Subjt:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPI

Q9WVL1 AP-4 complex subunit sigma-15.8e-1655.88Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P+ +++K S
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Q9Y587 AP-4 complex subunit sigma-12.6e-1655.88Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS
        +NE+AI EFIH  VE +D +F  V ELDIMF+L+K H +L+EMV+NGCIVET+++ IL+P+ +++K S
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS

Arabidopsis top hitse value%identityAlignment
AT1G47830.1 SNARE-like superfamily protein4.4e-1147.69Show/hide
Query:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
        NELA LE IHL VE +D  F NVCELD++F+  K + +L+E ++ G + ETSK  I+  +  +EK
Subjt:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK

AT2G17380.1 associated protein 199.8e-1143.08Show/hide
Query:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
        NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I   ++
Subjt:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK

AT2G19790.1 SNARE-like superfamily protein1.1e-3092.54Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS
        +NELAILEFIHLLVETMD+HFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSK+NILSPIQLM+K+
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKS

AT3G50860.1 Clathrin adaptor complex small chain family protein3.1e-1245.45Show/hide
Query:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
        +NELA+L+ I +LVET+D+ F NVCELDI+F+  K H +L+E+V  G ++ETS + ++  ++ + K
Subjt:  QNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK

AT4G35410.2 Clathrin adaptor complex small chain family protein9.8e-1143.08Show/hide
Query:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK
        NEL +LE IH  VE +DR+FG+VCELD++F+  KA+++L+E+++ G + E+SK  +   I   ++
Subjt:  NELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAA
AGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGCAGAATGAACTCGCAATTTTGGAATTCATTCACCTGTTGGTTGAAACCATGGACCGCCATTTCGGGAATGTGTGCGAGCTAGATATAATGTTTCATCTTGAGAA
AGCACATTTCATGCTGGAAGAGATGGTGATGAATGGGTGTATTGTAGAAACAAGCAAGTCAAACATTTTATCCCCAATACAACTGATGGAGAAATCATCATGAAAAATCT
ACGAATTATAATGTTTGGTGCAAAATCTTGGCTGTCCTTATACTGTACGTACTCCATTAAAGCTATCGACTTGATGTTAATGAATTTATTTGATTGTGCTCTGTTCAGCC
ACTTGGTAAAATGCATGTGATAGATCTCAACATCAATCCAAGCCAATTGAAGCTTAATCCATCAACCTTTAGAGTTTCCCAAATTGATTTTACAACTTTTAGGTTTTAGG
CTGCTTGGTTCGTGATTTGATAATACAATTTTTAATACCAGGGTTTCAATCTTTGATAATATATTTATGAAATATCAGATTCGATTCTTCTTAAGTCGATGAGAATAGGT
TTAGGCTCGACTAGATTTAGAAATTCGTTAGGACGTTTACGAGGCTATTCTTCACGATGGGAATGAATTTTTGTTCATTTTCTCAGTAAATAACTTATCTTTGTTCATTT
TTTTCGTTACGACTAAAAATTTAGATATTCATTAAGACCTTTAGGAGGCTGTTCTTCACTTTACAAATTTATTTTTGTTTTTTGT
Protein sequenceShow/hide protein sequence
MLQNELAILEFIHLLVETMDRHFGNVCELDIMFHLEKAHFMLEEMVMNGCIVETSKSNILSPIQLMEKSS