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Carg13053 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13053
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionarabinogalactan peptide 22-like
Genome locationCarg_Chr04:3725189..3726857
RNA-Seq ExpressionCarg13053
SyntenyCarg13053
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR009424 - Arabinogalactan protein 16/20/22/41


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600532.1 Arabinogalactan protein 20, partial [Cucurbita argyrosperma subsp. sororia]6.2e-29100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF

KAG7031172.1 Arabinogalactan peptide 20 [Cucurbita argyrosperma subsp. argyrosperma]6.2e-29100Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF

XP_022941572.1 arabinogalactan peptide 22-like [Cucurbita moschata]1.8e-2898.67Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL SSSSSNF
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF

XP_022985432.1 arabinogalactan peptide 20 [Cucurbita maxima]3.0e-2390Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL+SS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

XP_023522233.1 arabinogalactan peptide 22-like [Cucurbita pepo subsp. pepo]2.3e-2898.67Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSS+F
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF

TrEMBL top hitse value%identityAlignment
A0A0A0KZS8 Uncharacterized protein3.3e-2083.58Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL
        MAVSR+SFG +AA AL+F IFLPVA P SLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL

A0A6J1C4C2 arabinogalactan peptide 22-like1.8e-2184.29Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSRASFGFVAAAAL+F IFLPVA P SL PAPAP+SDGTSIDQGIAY+LM VALALTYLIH+ADL++S
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

A0A6J1ETC6 arabinogalactan peptide 22-like3.2e-2388.57Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL++S
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

A0A6J1FMT5 arabinogalactan peptide 22-like8.7e-2998.67Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
        MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADL SSSSSNF
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF

A0A6J1J4V7 arabinogalactan peptide 201.4e-2390Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS
        MAVSR SFGFVAAAAL+F IFLPVAQPQSLAPAPAPTSDGTSIDQGIAY+LM VALALTYLIH+ADL+SS
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASS

SwissProt top hitse value%identityAlignment
O82337 Arabinogalactan protein 161.3e-1365.22Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSS
        SR S    A  + VF + L +A  QSLAPAPAPTSDGTSIDQGIAY+LM VAL LTYLIH  D +SS S
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSS

Q8L9T8 Arabinogalactan protein 414.5e-1465.08Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        M+ SR  FG     +++F I LP+A  QS APAPAPTSDGT+IDQGIAY+LM VAL LTYLIH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH

Q9FK16 Arabinogalactan protein 227.1e-1260.32Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        MA  +     +A   ++  I LP+AQ  S +PAPAPTSDGTSIDQGIAY+LM VALALTY IH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH

Q9M373 Arabinogalactan protein 205.3e-1563.89Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
        SR S   +A  A VF +  P A  QSLAPAP+PTSDGTSIDQGIAY+LM VAL LTYLIH  D +SSS + F
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF

Arabidopsis top hitse value%identityAlignment
AT2G46330.1 arabinogalactan protein 169.2e-1565.22Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSS
        SR S    A  + VF + L +A  QSLAPAPAPTSDGTSIDQGIAY+LM VAL LTYLIH  D +SS S
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSS

AT3G61640.1 arabinogalactan protein 203.7e-1663.89Show/hide
Query:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF
        SR S   +A  A VF +  P A  QSLAPAP+PTSDGTSIDQGIAY+LM VAL LTYLIH  D +SSS + F
Subjt:  SRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF

AT5G24105.1 arabinogalactan protein 413.2e-1565.08Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        M+ SR  FG     +++F I LP+A  QS APAPAPTSDGT+IDQGIAY+LM VAL LTYLIH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH

AT5G53250.1 arabinogalactan protein 225.1e-1360.32Show/hide
Query:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH
        MA  +     +A   ++  I LP+AQ  S +PAPAPTSDGTSIDQGIAY+LM VALALTY IH
Subjt:  MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGTTTCTAGGGCATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCAC
CAGCGACGGGACATCCATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCA
ACTTCTAG
mRNA sequenceShow/hide mRNA sequence
AAAAGCTAACCCTATAAAAGGGCACACCCTGGGAAGTTTGTATCCCCTCGTTTGCCCGTCGCGAGACTGCCTCTGTTTCCGTCTAGAGATTTCGTCTTCTTCTTCATTTC
GCCCTTCGAGAAGAGAAAGGGAGATTCCTTTCCTTCTCTCTCTCTCTCTGCGAGCCTCTTTGAAGCTATTGGAGAAGAAGCCTTTTGAAGCTTCTTTACCTGAGAGTCGC
ATCGCAGAGAGAGATCTAACCTACTGTACAACATTTCTTGCGATTCTTCGCCTACAGAAAGGAGAGGGGAAATTACCGCACGATTCGGACTCATATGGCGGTTTCTAGGG
CATCTTTTGGATTCGTGGCTGCCGCTGCGCTCGTCTTCACCATCTTCTTGCCGGTTGCTCAGCCTCAGTCTTTGGCTCCGGCTCCCGCTCCCACCAGCGACGGGACATCC
ATAGATCAAGGGATAGCTTATATCTTAATGGGGGTGGCATTGGCGCTCACATATCTCATCCACAGTGCTGACTTAGCCAGCAGCAGCAGCAGCAACTTCTAGAAGCATAA
TATAGTATTTGGGAGTTTAGTTAGAAGTGGCAATGGGTTCTTCTCTTGCTGCATCCTTTCCTGTTTCTGTTTTATTTATTTATGAGATCATCATCATCATCATCCTCACA
CATTTCTTCTATGTACATTCTCCTCATTTTTAAATGACATTTATTGGCTTTCCCTTTTTCCCCCTTTCTTCTCCCCTTCAATTTTGTACCCAAATAACATAAAAAATATT
CTCTTCTTAATGTTACTAATATATTT
Protein sequenceShow/hide protein sequence
MAVSRASFGFVAAAALVFTIFLPVAQPQSLAPAPAPTSDGTSIDQGIAYILMGVALALTYLIHSADLASSSSSNF