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Carg13079 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13079
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAAA domain-containing protein
Genome locationCarg_Chr04:3599022..3600846
RNA-Seq ExpressionCarg13079
SyntenyCarg13079
Gene Ontology termsGO:0006508 - proteolysis (biological process)
GO:0009793 - embryo development ending in seed dormancy (biological process)
GO:0010020 - chloroplast fission (biological process)
GO:0045037 - protein import into chloroplast stroma (biological process)
GO:0009534 - chloroplast thylakoid (cellular component)
GO:0009706 - chloroplast inner membrane (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0062091 - Ycf2/FtsHi complex (cellular component)
GO:0004176 - ATP-dependent peptidase activity (molecular function)
GO:0004222 - metalloendopeptidase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016464 - chloroplast protein-transporting ATPase activity (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR037219 - Peptidase M41-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600510.1 putative inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]1.5e-4593Show/hide
Query:  VNAILADNVWNDLHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEERERKR
        VNAILADNVWNDLHT MCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILR MK E E ++
Subjt:  VNAILADNVWNDLHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEERERKR

KAG7031148.1 putative inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]6.8e-83100Show/hide
Query:  MLVVGLVATMVGSYAPLMACKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEE
        MLVVGLVATMVGSYAPLMACKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEE
Subjt:  MLVVGLVATMVGSYAPLMACKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEE

Query:  VIYGRDTSNASFSYLTNASWLAREILRIMKEERERKREDDFDYVAISQSTSEA
        VIYGRDTSNASFSYLTNASWLAREILRIMKEERERKREDDFDYVAISQSTSEA
Subjt:  VIYGRDTSNASFSYLTNASWLAREILRIMKEERERKREDDFDYVAISQSTSEA

OVA00957.1 Peptidase M41 [Macleaya cordata]1.6e-2076.06Show/hide
Query:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        +R SQ+VF  LDDESYMFER+PQLLH LQVLLGGRAAEE+IYGRDTS AS SYL +ASWLAR+IL I   E
Subjt:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

RVW15499.1 putative inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic [Vitis vinifera]5.7e-2161.46Show/hide
Query:  VNAILADNVWNDLHTTMCYPKNLK-ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        ++ ++   +WN L +     + L    LSQVVF  LDDESYMFER+PQLLH LQVLLGGRAAEEVIYGRDTS AS  YL +ASWLAR+IL I   E
Subjt:  VNAILADNVWNDLHTTMCYPKNLK-ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

XP_030951840.1 probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic isoform X2 [Quercus lobata]9.7e-2169.88Show/hide
Query:  LHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        +H    YP    E LSQ+VF  LDDESYMFER+PQLLH LQVLLGGRAAEEVIYGRDTS AS  YL +ASWLAR+IL I   E
Subjt:  LHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

TrEMBL top hitse value%identityAlignment
A0A072TVP5 FTSH extracellular protease family protein1.8e-2076.06Show/hide
Query:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        + LSQ+VF  LDDESYMFER+PQLLH LQVLLGGRAAEE+IYGRDTS AS  YL NASWLAR+IL I   E
Subjt:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

A0A200PRV3 Peptidase M418.0e-2176.06Show/hide
Query:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        +R SQ+VF  LDDESYMFER+PQLLH LQVLLGGRAAEE+IYGRDTS AS SYL +ASWLAR+IL I   E
Subjt:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

A0A438BWY0 Putative inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic2.7e-2161.46Show/hide
Query:  VNAILADNVWNDLHTTMCYPKNLK-ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        ++ ++   +WN L +     + L    LSQVVF  LDDESYMFER+PQLLH LQVLLGGRAAEEVIYGRDTS AS  YL +ASWLAR+IL I   E
Subjt:  VNAILADNVWNDLHTTMCYPKNLK-ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

A0A6A5MGX1 Putative peptidase M41, ATPase, AAA-type, core, P-loop containing nucleoside triphosphate hydrolase1.8e-2076.06Show/hide
Query:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        + LSQV+F  LDDESYMFER+PQLLH LQVLLGGRAAEEVIYGRDTS AS  YL +ASWLAR+IL I   E
Subjt:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

A0A6J1C7Y3 probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic8.0e-2178.87Show/hide
Query:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        + LSQVVF  LDDESYMFER+PQLLH LQVLLGGRAAEEVIYGRDTS AS SYL +ASWLAR+IL I   E
Subjt:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

SwissProt top hitse value%identityAlignment
O22993 Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic3.5e-2174.65Show/hide
Query:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        + LSQVVF  LDDESYMF R PQLLH LQVLLGGRAAEEVIYG DTS AS  YL++ASWLAR+IL I   E
Subjt:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

Arabidopsis top hitse value%identityAlignment
AT1G29670.1 GDSL-like Lipase/Acylhydrolase superfamily protein1.8e-0435.42Show/hide
Query:  CKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERLSQV
        C+  + +++WD FHPT+A N I+A   +N    +  YP ++  RL+Q+
Subjt:  CKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERLSQV

AT4G10950.1 SGNH hydrolase-type esterase superfamily protein6.2e-1872Show/hide
Query:  APLMACKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERL
        +P MAC  AS H+WWDQFHPTDAVNAILADNVWN  H  MCYP NL+  L
Subjt:  APLMACKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERL

AT4G23940.1 FtsH extracellular protease family2.5e-2274.65Show/hide
Query:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE
        + LSQVVF  LDDESYMF R PQLLH LQVLLGGRAAEEVIYG DTS AS  YL++ASWLAR+IL I   E
Subjt:  ERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNASFSYLTNASWLAREILRIMKEE

AT5G08460.1 GDSL-like Lipase/Acylhydrolase superfamily protein2.3e-0441.86Show/hide
Query:  CKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKE
        C     H++WD FHPT A N I+A   +N   +  CYP NL +
Subjt:  CKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKE

AT5G22810.1 GDSL-like Lipase/Acylhydrolase superfamily protein2.3e-0455.56Show/hide
Query:  CKKASNHIWWDQFHPTDAVNAILADNV
        C  A+ +++WD FHPT+A N ILADN+
Subjt:  CKKASNHIWWDQFHPTDAVNAILADNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTGTTGTGGGTTTGGTCGCTACAATGGTTGGATCATATGCACCGCTTATGGCTTGCAAAAAAGCTTCTAATCATATTTGGTGGGATCAATTCCATCCAACTGATGC
AGTGAATGCCATTCTTGCAGACAATGTATGGAATGACCTCCATACAACAATGTGCTATCCTAAGAACTTGAAGGAGAGACTGTCACAAGTTGTATTTGGTTGGCTTGATG
ATGAATCATACATGTTTGAGCGGCAACCACAATTACTTCACTGTCTTCAGGTGTTACTTGGAGGCAGGGCCGCAGAAGAGGTCATCTATGGACGAGACACATCAAATGCA
TCGTTTAGCTATCTTACCAATGCTTCATGGCTGGCTCGTGAAATTTTAAGAATCATGAAGGAAGAACGAGAACGAAAACGAGAAGATGACTTCGATTACGTTGCCATTTC
TCAGTCGACAAGTGAAGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTTGTTGTGGGTTTGGTCGCTACAATGGTTGGATCATATGCACCGCTTATGGCTTGCAAAAAAGCTTCTAATCATATTTGGTGGGATCAATTCCATCCAACTGATGC
AGTGAATGCCATTCTTGCAGACAATGTATGGAATGACCTCCATACAACAATGTGCTATCCTAAGAACTTGAAGGAGAGACTGTCACAAGTTGTATTTGGTTGGCTTGATG
ATGAATCATACATGTTTGAGCGGCAACCACAATTACTTCACTGTCTTCAGGTGTTACTTGGAGGCAGGGCCGCAGAAGAGGTCATCTATGGACGAGACACATCAAATGCA
TCGTTTAGCTATCTTACCAATGCTTCATGGCTGGCTCGTGAAATTTTAAGAATCATGAAGGAAGAACGAGAACGAAAACGAGAAGATGACTTCGATTACGTTGCCATTTC
TCAGTCGACAAGTGAAGCTTGA
Protein sequenceShow/hide protein sequence
MLVVGLVATMVGSYAPLMACKKASNHIWWDQFHPTDAVNAILADNVWNDLHTTMCYPKNLKERLSQVVFGWLDDESYMFERQPQLLHCLQVLLGGRAAEEVIYGRDTSNA
SFSYLTNASWLAREILRIMKEERERKREDDFDYVAISQSTSEA