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Carg13135 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13135
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionProtein FAR1-RELATED SEQUENCE
Genome locationCarg_Chr04:3232783..3233288
RNA-Seq ExpressionCarg13135
SyntenyCarg13135
Gene Ontology termsGO:0009585 - red, far-red light phototransduction (biological process)
GO:0010018 - far-red light signaling pathway (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:1900056 - negative regulation of leaf senescence (biological process)
GO:0005634 - nucleus (cellular component)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600441.1 Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. sororia]7.6e-3694.05Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ
        MEPPHDASYYVNQQSIQGL     GQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ
KAG7031092.1 Protein FAR-RED IMPAIRED RESPONSE 1, partial [Cucurbita argyrosperma subsp. argyrosperma]3.9e-40100Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ
        MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ
XP_022942290.1 LOW QUALITY PROTEIN: protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita moschata]2.2e-1988.33Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPPHDASYYVNQQSIQGL     GQLNTIAASQDGF GAQHNGIHALVDYRPATS+SYS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
XP_022979146.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita maxima]1.6e-1785Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPP DASYYVNQQSIQGL     GQLNTIAAS DG  GAQHNGIHALVDYRPATSYSYS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
XP_023529499.1 protein FAR-RED IMPAIRED RESPONSE 1-like [Cucurbita pepo subsp. pepo]1.4e-1886.67Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPP DASYYVNQQSIQGL     GQLNTI ASQDGF GAQHNGIHALVDYRPATSYSYS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
TrEMBL top hitse value%identityAlignment
A0A0A0KXC8 Protein FAR1-RELATED SEQUENCE1.1e-1678.33Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPPHDASYYV+QQSIQGL     GQLNTIAA+ DGF G QHN IH LVDYRP TSYSYS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
A0A6J1EYG5 Protein FAR1-RELATED SEQUENCE8.6e-1778.33Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPPHDASYYV+QQSIQGL     GQLNTIAA+ DG+ GAQH+ IHALVDYRPATSY+YS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
A0A6J1FW03 Protein FAR1-RELATED SEQUENCE1.1e-1988.33Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPPHDASYYVNQQSIQGL     GQLNTIAASQDGF GAQHNGIHALVDYRPATS+SYS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
A0A6J1IPY8 Protein FAR1-RELATED SEQUENCE7.7e-1885Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPP DASYYVNQQSIQGL     GQLNTIAAS DG  GAQHNGIHALVDYRPATSYSYS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
A0A6J1J902 Protein FAR1-RELATED SEQUENCE8.6e-1778.33Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
        MEPPHDASYYV+QQSIQGL     GQLNTIAA+ DG+ GAQH+ IHALVDYRPATSY+YS
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYS
SwissProt top hitse value%identityAlignment
Q9SWG3 Protein FAR-RED IMPAIRED RESPONSE 18.5e-0645.16Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQH--NGIHALVDYRPATSYSYS
        MEPPH+  YYV+Q++IQGL     GQLN+IA +QD F   Q   +G+   +D+RP  +++Y+
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQH--NGIHALVDYRPATSYSYS
Arabidopsis top hitse value%identityAlignment
AT4G15090.1 FRS (FAR1 Related Sequences) transcription factor family6.1e-0745.16Show/hide
Query:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQH--NGIHALVDYRPATSYSYS
        MEPPH+  YYV+Q++IQGL     GQLN+IA +QD F   Q   +G+   +D+RP  +++Y+
Subjt:  MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQH--NGIHALVDYRPATSYSYS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGCCTCCCCACGATGCTTCGTATTATGTCAATCAACAAAGTATTCAAGGGCTGGTTAGTCTTGCTATGGGACAATTGAATACAATTGCAGCCAGTCAGGATGGGTT
TTCTGGGGCGCAGCATAATGGCATTCATGCACTGGTGGATTATCGGCCAGCAACAAGTTATAGTTATAGTTTTACAGGATTAGCAACATTTAAGATCTGCCCAGCTTCAT
GGCAGTACCTCAGGACATACTTGATGAAGCAATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGCCTCCCCACGATGCTTCGTATTATGTCAATCAACAAAGTATTCAAGGGCTGGTTAGTCTTGCTATGGGACAATTGAATACAATTGCAGCCAGTCAGGATGGGTT
TTCTGGGGCGCAGCATAATGGCATTCATGCACTGGTGGATTATCGGCCAGCAACAAGTTATAGTTATAGTTTTACAGGATTAGCAACATTTAAGATCTGCCCAGCTTCAT
GGCAGTACCTCAGGACATACTTGATGAAGCAATAG
Protein sequenceShow/hide protein sequence
MEPPHDASYYVNQQSIQGLVSLAMGQLNTIAASQDGFSGAQHNGIHALVDYRPATSYSYSFTGLATFKICPASWQYLRTYLMKQ