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Carg13178 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13178
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription elongation factor 1 homolog
Genome locationCarg_Chr04:2969429..2971644
RNA-Seq ExpressionCarg13178
SyntenyCarg13178
Gene Ontology termsGO:0006368 - transcription elongation from RNA polymerase II promoter (biological process)
GO:0006414 - translational elongation (biological process)
GO:0008023 - transcription elongation factor complex (cellular component)
GO:0000993 - RNA polymerase II complex binding (molecular function)
GO:0003746 - translation elongation factor activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR007808 - Transcription elongation factor 1
IPR038567 - Transcription elongation factor 1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EOY28130.1 Transcription elongation factor 1 isoform 2, partial [Theobroma cacao]2.3e-2980.46Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTM
        MGKRKSRAKP PKKRMDKLDTVFSCPFCNHGTSV+CR+DMKNLIGEASC ICQE FST IT        DIANG MNVSG TTLK M
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTM

KAG5546170.1 hypothetical protein RHGRI_018370 [Rhododendron griersonianum]1.0e-2973.91Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGI
        MGKRKS+AKPPPKKRMDKLDTVFSCPFCNHG+SV+CRIDMKNLIGEA C ICQE FS ++T        DI NGSMNV+GST LK M+LR +
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGI

KAG6790299.1 hypothetical protein POTOM_006447 [Populus tomentosa]1.3e-2977.53Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVL
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSV+CR+DMKNLIGEA CGIC E FS +IT        DIANG MNV GST  K MVL
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVL

KAG7031051.1 Transcription elongation factor 1-like protein [Cucurbita argyrosperma subsp. argyrosperma]2.7e-54100Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINWGVFCMK
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINWGVFCMK
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINWGVFCMK

Query:  RSWLV
        RSWLV
Subjt:  RSWLV

XP_018850113.1 transcription elongation factor 1 homolog isoform X1 [Juglans regia]1.2e-3379.79Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINW
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSV+CRIDMKNLIGEASCGICQE FST++T        DI NGS NVSGSTTLK MVLR +++
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINW

TrEMBL top hitse value%identityAlignment
A0A061GE28 Transcription elongation factor 1 homolog (Fragment)1.1e-2980.46Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTM
        MGKRKSRAKP PKKRMDKLDTVFSCPFCNHGTSV+CR+DMKNLIGEASC ICQE FST IT        DIANG MNVSG TTLK M
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTM

A0A2I0WAG5 Transcription elongation factor 1 homolog9.3e-2975.28Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVL
        MGKRKSRAKPPPKKRMDKLDTVF CPFCNHG+SV+CRID+KNLIGEASC ICQE FS +IT        DIANGSMN +GST  + MVL
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVL

A0A2I4H1T1 Transcription elongation factor 1 homolog5.6e-3479.79Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINW
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSV+CRIDMKNLIGEASCGICQE FST++T        DI NGS NVSGSTTLK MVLR +++
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINW

A0A5D2DM89 Transcription elongation factor 1 homolog2.5e-2975.56Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLR
        MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGT V+CR+DMKNLIGEA C ICQE F T+IT        D  NGSMNV  STTLKT +LR
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLR

A0A6P5WJ45 Transcription elongation factor 1 homolog4.2e-2976.67Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLR
        MGKRKSRAKP PKKRMDKLDTVFSCPFCNHGTSV+CR+DMKNLIGEASC ICQE FST IT        D A+GS NVSG TTLK M +R
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLR

SwissProt top hitse value%identityAlignment
A4IFR3 Transcription elongation factor 1 homolog1.3e-1153.23Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S D ++D     G  SC +C E F T IT
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT

P36053 Transcription elongation factor 11.0e-1153.33Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSI
        MGKRK   + P K+ + KLDT F+C FCNH  SV C +D KN IG  SC IC + F T I
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSI

P60002 Transcription elongation factor 1 homolog1.3e-1153.23Show/hide
Query:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT
        MG+RKS+ KPPPKK+M   L+T F+CPFCNH  S D ++D     G  SC +C E F T IT
Subjt:  MGKRKSRAKPPPKKRM-DKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT

Q8LEF3 Transcription elongation factor 1 homolog4.3e-2378.69Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SV+C IDMK+LIG+A+C IC+E FST+IT
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT

Q8LHP0 Transcription elongation factor 1 homolog4.2e-2688.33Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSI
        MGKRKS AKPPPKKRMDKLDTVFSCPFCNHG+SV+CRIDMKNLIGEASC ICQE FST++
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSI

Arabidopsis top hitse value%identityAlignment
AT5G46030.1 unknown protein3.1e-2478.69Show/hide
Query:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT
        MGKRKSRAKP P KRMDKLDT+FSCPFCNHG+SV+C IDMK+LIG+A+C IC+E FST+IT
Subjt:  MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSIT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATGGCACCAGTGTGGATTGTCG
CATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGTTGACATGATGTTCTTTCGATCAGATATAGCGAATG
GATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGGTGCTTAGGGGGATTAATTGGGGCGTTTTCTGTATGAAAAGAAGCTGGCTAGTTTGA
mRNA sequenceShow/hide mRNA sequence
CAGCCTCACGCCATAAGAAATGGGGAAAAGGAAGTCGAGAGCGAAGCCCCCACCTAAGAAGAGAATGGACAAGCTTGATACTGTTTTTAGCTGCCCCTTCTGCAATCATG
GCACCAGTGTGGATTGTCGCATTGATATGAAGAACTTGATTGGGGAAGCCTCCTGTGGAATTTGCCAAGAAGGCTTTAGCACATCCATTACAGTTGACATGATGTTCTTT
CGATCAGATATAGCGAATGGATCGATGAATGTGAGCGGGTCAACAACCCTGAAGACGATGGTGCTTAGGGGGATTAATTGGGGCGTTTTCTGTATGAAAAGAAGCTGGCT
AGTTTGAAGTTCCTTTGATGAATCTAAATTAAGAGGAGGGGATCTTATTGGTAGGTATGACAACACTCCTACTCTCGTAGCGTGTATGTACAGTAGTATGTTGTGATAGA
CAAGTGTGTGTACAGTAATATGTTGTGATGTCTTGCATGTTGACTTAATCTTGAATTTTAAGCACCTGTAACTTCCTTTCCTTATTTTGAGTCACGAGTCTTGTGGACAC
AAATAGTAAATGTCACTGCGAATTTTCGTGGGATCCTGAAACCTCATTTTGTTAATGAAATATTGAAGGGTGTTGTTCTACTTTGTTTTGCTTTGTGTCAATGGTTGTGC
TTT
Protein sequenceShow/hide protein sequence
MGKRKSRAKPPPKKRMDKLDTVFSCPFCNHGTSVDCRIDMKNLIGEASCGICQEGFSTSITVDMMFFRSDIANGSMNVSGSTTLKTMVLRGINWGVFCMKRSWLV