CuGenDBv2

Gene ID	Carg13186
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	S4 RNA-binding domain-containing protein
Genome location	Carg_Chr04:2930502..2934183
RNA-Seq Expression	Carg13186
Synteny	Carg13186
Gene Ontology terms	GO:0003723 - RNA binding (molecular function)
InterPro domains	IPR002942 - RNA-binding S4 domain IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR017506 - Photosystem II S4 IPR036986 - RNA-binding S4 domain superfamily IPR040591 - YlmH, putative RNA-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600381.1 hypothetical protein SDJN03_05614, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-173

100

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Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

XP_022941558.1 uncharacterized protein LOC111446880 isoform X1 [Cucurbita moschata]

2.4e-170

98.76

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Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINPTKKGKFAIELIKYV
        RLKIGEINPTKKGKFAIELIKYV
Subjt:  RLKIGEINPTKKGKFAIELIKYV

XP_022941560.1 uncharacterized protein LOC111446880 isoform X2 [Cucurbita moschata]

9.7e-172

99.07

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Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

XP_022981895.1 uncharacterized protein LOC111480897 isoform X1 [Cucurbita maxima]

1.7e-168

96.58

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Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAAQSSS RTPLA+NL KVSFHEARFP+SPSSPLG+SGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNF+FHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFIS GDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFA+ELI+YV
Subjt:  LKIGEINPTKKGKFAIELIKYV

XP_023554595.1 uncharacterized protein LOC111811761 isoform X1 [Cucurbita pepo subsp. pepo]

4.8e-171

98.45

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Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRA  SSSFRTPLA+NL KVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD+VSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LC56 S4 RNA-binding domain-containing protein

1.3e-153

88.82

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Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAA   SI ALWSLRRAAQ SSFR PLA+NL ++ F+EARF   PSSPLG SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVK ILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDI+LQEE GAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFL+SSLRKVGNVTVSCTRIPLT L+YEPPKTKTFKTIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT+ITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEIN TKKGKFA+ELI+YV
Subjt:  LKIGEINPTKKGKFAIELIKYV

A0A6J1CP18 uncharacterized protein LOC111012786 isoform X1

7.5e-154

88.71

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Query:  ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  SIGALWSLRRAAQ+SSFR PLA+NL   SFH+ARFP SPSSP G+SG+CQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
Subjt:  ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD++SALSITGNF FH C+HGDFLG+ILGTGIAREKLGDIILQ E GAQVV+VPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI
        LVDFL+SSLRKVGNVTVSCTRIPLT LDYEPPKTKTF TIEASLRVDA+ASAGFKISRSKLVD IS GDVRVNWT +TKNGT LKTGD+VSVSGKGRLKI
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINPTKKGKFAIELIKYV
        GEIN TKKGKF++ELI+YV
Subjt:  GEINPTKKGKFAIELIKYV

A0A6J1FSF6 uncharacterized protein LOC111446880 isoform X1

1.2e-170

98.76

Show/hide

Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI SGGDVRVNWTTITKNGTILKTGDIVSVSGKG
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFI-SGGDVRVNWTTITKNGTILKTGDIVSVSGKG

Query:  RLKIGEINPTKKGKFAIELIKYV
        RLKIGEINPTKKGKFAIELIKYV
Subjt:  RLKIGEINPTKKGKFAIELIKYV

A0A6J1FU11 uncharacterized protein LOC111446880 isoform X2

4.7e-172

99.07

Show/hide

Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAA+SSSFRTPLA+NLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVF TCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFAIELIKYV
Subjt:  LKIGEINPTKKGKFAIELIKYV

A0A6J1J103 uncharacterized protein LOC111480897 isoform X1

8.3e-169

96.58

Show/hide

Query:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
        MAAATASIGALWSLRRAAQSSS RTPLA+NL KVSFHEARFP+SPSSPLG+SGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT
Subjt:  MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHT

Query:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
        NFLTPPVVKESMLAI+KLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNF+FHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI
Subjt:  NFLTPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVI

Query:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR
        VPELVDFLVSSL KVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFIS GDVRVNWTTITKNGTILKTGDIVSVSGKGR
Subjt:  VPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGR

Query:  LKIGEINPTKKGKFAIELIKYV
        LKIGEINPTKKGKFA+ELI+YV
Subjt:  LKIGEINPTKKGKFAIELIKYV

SwissProt top hits

e value

%identity

Alignment

P71020 Putative RNA-binding protein YlmH

5.2e-19

30.18

Show/hide

Query:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKG
        T+FL P   +E ++  A+   ADV     GGY  AER R ++   + +T +     + A ++     F +  H   LGA++G G+ R+K GDI+   E  
Subjt:  TNFLTPPVVKESML--AIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPD--VVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKG

Query:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSV
         Q+++  +  DF+ + L + G   VS  +I L+DL+      +      +SLR+DA+ ++  + SR K    +  G V+VNW  +     I+  GD++S+
Subjt:  AQVVIVPELVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSV

Query:  SGKGRLKIGEI-NPTKKGKFAI
         G GR  + +I   TKK K+ +
Subjt:  SGKGRLKIGEI-NPTKKGKFAI

Arabidopsis top hits

e value

%identity

Alignment

AT1G53120.1 RNA-binding S4 domain-containing protein

4.4e-114

64.89

Show/hide

Query:  ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL
        A  S+   W + R A  S   +       K        P+S      A   C   +A+KGD+D LL GVGD+ V  +VK IL MA+R+ S+REVLHT+FL
Subjt:  ATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFL

Query:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE
        TPP+VKES+  ++K ADVK +AQGGYPEAERCRIS+GH D LTSDPD+V+ALSITGNF F  C+HGDFLGAILGTGI+REKLGDI++QEEKGAQV+IVPE
Subjt:  TPPVVKESMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPE

Query:  LVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI
        LVDF+V++L KVGNV V+C++IPL  L+YEPP+T +FKT+EASLR+DA+ASAGFKISRSKLVD IS  DVRVNW T+TKNGTI+KTGD+VSVSGKGRLKI
Subjt:  LVDFLVSSLRKVGNVTVSCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKI

Query:  GEINPTKKGKFAIELIKYV
        GEIN TKKGKFA+E+I+Y+
Subjt:  GEINPTKKGKFAIELIKYV

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCGGCAAGGTCTCATTCCA
CGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTACTCAATGGAGTTGGAG
ATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCCACCTGTGGTGAAAGAG
TCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATGCTGATGAACTAACAAG
TGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACAGGCATTGCTAGGGAAA
AGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGTTGGCAATGTCACGGTT
TCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTCTAGCAAGTGCTGGATT
CAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAGACTGGTGATATTGTTT
CTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAG

mRNA sequence

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ACGATACGCACTAACCATGGCGGCAGCGACTGCGAGCATTGGAGCTCTGTGGAGCCTAAGAAGAGCAGCTCAATCTTCCAGTTTCCGAACTCCCCTTGCCATTAATCTCG
GCAAGGTCTCATTCCACGAGGCCCGGTTTCCCTCTTCTCCATCTTCTCCTCTTGGCGCCTCAGGAATGTGCCAATTAGTGCAGGCTGTGAAGGGAGACATTGATGTTTTA
CTCAATGGAGTTGGAGATAAAGGTGTTATTGTAGATGTGAAACATATTCTTGTTATGGCCAAACGTTCGTTATCAAGACGAGAAGTTCTCCATACAAACTTTCTCACTCC
ACCTGTGGTGAAAGAGTCAATGCTAGCCATTCAAAAACTAGCCGACGTGAAAGCAATAGCGCAGGGAGGATATCCAGAGGCAGAGCGCTGTCGGATTTCTGTTGGGCATG
CTGATGAACTAACAAGTGATCCAGACGTCGTTTCGGCATTGAGTATCACAGGAAATTTTGTGTTTCACACCTGCACACATGGGGACTTCCTTGGAGCAATTCTTGGCACA
GGCATTGCTAGGGAAAAGCTTGGTGATATCATACTCCAGGAAGAGAAGGGAGCTCAAGTAGTTATTGTTCCAGAACTCGTCGACTTCCTTGTATCATCACTGCGCAAGGT
TGGCAATGTCACGGTTTCTTGTACGAGGATTCCATTGACAGATCTCGATTATGAACCACCGAAGACTAAGACATTTAAAACCATTGAGGCATCTCTTAGGGTTGATGCTC
TAGCAAGTGCTGGATTCAAGATTTCACGGTCTAAACTAGTGGATTTCATCAGTGGCGGTGATGTACGTGTCAATTGGACGACGATTACTAAAAATGGAACCATACTAAAG
ACTGGTGATATTGTTTCTGTTAGTGGGAAAGGGAGACTAAAGATTGGCGAAATAAATCCTACAAAGAAGGGAAAATTCGCCATCGAGCTTATCAAGTACGTGTAGCTCTG
GCGTATTGGATCGTTCGGAGTTGAACTGGGTAAAGATTGTCATGGAATCTCCCTCAAGGTCGAACTCAAGGAAGCATAAGAATAATTAAAGTAGTGATTTGAACACATTT
GAATAGTTGTTCAAAGGAGTACCTAATGATCCAAACTGAAATTTGATGCTGAAATGGTGTATGGAGTACTTGAAAAGTGAATAACTGGCATTTTAGACTTTAAAGAACAA
TGGAAGAGAGGGATAAAAGGGGAAACTTGCGAGTGAAGTGTCTTGGTTTAGTGTTTAGGGTTAAATGTCTTATCCGTCTCACAGTTTTAAAACGTGTCTGTTAGAGAGTT
TCC

Protein sequence

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MAAATASIGALWSLRRAAQSSSFRTPLAINLGKVSFHEARFPSSPSSPLGASGMCQLVQAVKGDIDVLLNGVGDKGVIVDVKHILVMAKRSLSRREVLHTNFLTPPVVKE
SMLAIQKLADVKAIAQGGYPEAERCRISVGHADELTSDPDVVSALSITGNFVFHTCTHGDFLGAILGTGIAREKLGDIILQEEKGAQVVIVPELVDFLVSSLRKVGNVTV
SCTRIPLTDLDYEPPKTKTFKTIEASLRVDALASAGFKISRSKLVDFISGGDVRVNWTTITKNGTILKTGDIVSVSGKGRLKIGEINPTKKGKFAIELIKYV

Carg13186 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome