; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg13301 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13301
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionradixin-like isoform X1
Genome locationCarg_Chr07:6178789..6180765
RNA-Seq ExpressionCarg13301
SyntenyCarg13301
Gene Ontology termsGO:0051983 - regulation of chromosome segregation (biological process)
InterPro domainsIPR044951 - Kinetochore protein SPC24-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595410.1 Kinetochore protein SPC24-like protein, partial [Cucurbita argyrosperma subsp. sororia]3.9e-9399.46Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELD
        MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELD
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELD

Query:  RQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP
        RQRISVQE+KQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP
Subjt:  RQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP

KAG7027420.1 hypothetical protein SDJN02_11433, partial [Cucurbita argyrosperma subsp. argyrosperma]1.8e-93100Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELD
        MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELD
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELD

Query:  RQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP
        RQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP
Subjt:  RQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP

XP_022931907.1 uncharacterized protein LOC111438184 [Cucurbita moschata]6.9e-9091.04Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----
        MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE     
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----

Query:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                    INELDRQRISVQE+KQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
Subjt:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

XP_022966574.1 uncharacterized protein LOC111466216 [Cucurbita maxima]2.2e-8386.57Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----
        MGDFSGKMNIE+LLSYG+DLV LLKDQNDVQTLNQCLQHFNALQSS HDD  NVH  VQDYEKKIEECRVKTEEAKARTVADDEMDILEKE+EEE     
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----

Query:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                    INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTK SSFDICNDIWNMINS
Subjt:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

XP_023518318.1 uncharacterized protein LOC111781837 [Cucurbita pepo subsp. pepo]1.0e-8890.55Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----
        MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQ FNALQSS HDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE     
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----

Query:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                    INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
Subjt:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

TrEMBL top hitse value%identityAlignment
A0A6J1CR83 uncharacterized protein LOC111013852 isoform X18.8e-7579.1Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------
        MGDFSGK+NIE+LLSYG+DLVALLKDQ DVQTLNQCL+H  ALQS   DD  NVHSSVQDYEKKIE CR KTEEAKARTVAD EMD+LE+E+EE      
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------

Query:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                   EINELD QRISVQERKQA KKLEQQELRAQRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQKFELDPTK S+FDICN IW+MINS
Subjt:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1F034 uncharacterized protein LOC1114381843.3e-9091.04Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----
        MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE     
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----

Query:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                    INELDRQRISVQE+KQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
Subjt:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1GFS1 uncharacterized protein LOC1114535281.8e-7276.12Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------
        M DF+GK NIE+LLSYGDDLVALL DQNDVQTLNQCL+HF  LQSS  DD  NV SSVQDYEKKIE CR KTEEA+  TV+DDE+DILEKE+ E      
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------

Query:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                   EIN+LDRQRISVQERKQA KKLEQQELR QRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE DPT +SSFDICN IWNMINS
Subjt:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1HU69 uncharacterized protein LOC1114662161.0e-8386.57Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----
        MGDFSGKMNIE+LLSYG+DLV LLKDQNDVQTLNQCLQHFNALQSS HDD  NVH  VQDYEKKIEECRVKTEEAKARTVADDEMDILEKE+EEE     
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE-----

Query:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                    INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTK SSFDICNDIWNMINS
Subjt:  ------------INELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

A0A6J1IPN8 uncharacterized protein LOC1114783202.2e-7377.11Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------
        M DF+GK NIE++LSYGDDLVALL DQNDVQTLNQCL+HF  LQSS  DD  NV SSVQDYEKKIE CR KTEEAKA TVADDE+DILEKE+ E      
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------

Query:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS
                   EIN+LDRQRISVQERKQA KKLEQQELR QRKLSMYASVTDIIPNMDD SKISGHIVDRNKRVVQ+FE DPT +SSFDICN IWNMINS
Subjt:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINS

Query:  P
        P
Subjt:  P

SwissProt top hitse value%identityAlignment
Q67XT3 Kinetochore protein SPC24 homolog1.1e-3741.71Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------
        MG+ S   +IEDL+SYGDDL+ LL  +N    ++Q  + F AL  + H+D   +  S++D + K+  C+ KTEEA +   A+DE++ L+KE++E      
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------

Query:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMIN
                   E+ +L+ Q  S+ E KQ+TK+  + +LRA++KLSMYASVT++IP++DD SKISG++VDR KR+++KF+ +  KM++++ CN IW++IN
Subjt:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMIN

Arabidopsis top hitse value%identityAlignment
AT3G08880.1 unknown protein7.7e-3941.71Show/hide
Query:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------
        MG+ S   +IEDL+SYGDDL+ LL  +N    ++Q  + F AL  + H+D   +  S++D + K+  C+ KTEEA +   A+DE++ L+KE++E      
Subjt:  MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEE------

Query:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMIN
                   E+ +L+ Q  S+ E KQ+TK+  + +LRA++KLSMYASVT++IP++DD SKISG++VDR KR+++KF+ +  KM++++ CN IW++IN
Subjt:  -----------EINELDRQRISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMIN

AT5G01570.1 unknown protein2.0e-2637.71Show/hide
Query:  NIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE------INELDRQ
        N E ++S+GD+L+ +L D+     L Q L+   A+  S  +D + +H S+QD +KK++ C+ KT+EA +    ++E++ L+KE++EE      + E  R 
Subjt:  NIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEE------INELDRQ

Query:  RISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSS-FDICND
            +E + A K+ ++ +LR + KL MYASVT +IPN+DD  K SG++V R+KR++ KFE D  K +S ++ CN+
Subjt:  RISVQERKQATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSS-FDICND


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCT
CCAACATTTCAACGCCCTTCAATCTTCTTCTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGAATGTCGGGTGAAAACAGAGG
AGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAATTAATGAGCTAGACCGACAAAGGATTTCTGTTCAAGAAAGGAAG
CAGGCAACGAAGAAACTTGAACAACAAGAACTTAGGGCGCAGAGGAAGCTTTCAATGTATGCATCTGTCACTGATATCATTCCAAACATGGATGATCACTCCAAAATATC
TGGCCATATTGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTTCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCCC
CATAG
mRNA sequenceShow/hide mRNA sequence
ATGGGGGATTTCTCCGGAAAGATGAACATCGAGGACCTCTTATCTTATGGCGACGATCTGGTGGCTTTATTGAAGGACCAAAACGACGTTCAAACCTTGAATCAATGTCT
CCAACATTTCAACGCCCTTCAATCTTCTTCTCACGATGATTCCCGTAATGTTCACAGCTCAGTTCAAGATTATGAGAAGAAAATCGAGGAATGTCGGGTGAAAACAGAGG
AGGCGAAAGCGAGAACTGTTGCAGATGATGAAATGGATATTCTTGAAAAGGAGATCGAAGAGGAAATTAATGAGCTAGACCGACAAAGGATTTCTGTTCAAGAAAGGAAG
CAGGCAACGAAGAAACTTGAACAACAAGAACTTAGGGCGCAGAGGAAGCTTTCAATGTATGCATCTGTCACTGATATCATTCCAAACATGGATGATCACTCCAAAATATC
TGGCCATATTGTGGATAGAAATAAACGGGTTGTGCAGAAGTTTGAATTGGATCCGACTAAGATGTCTTCTTTTGATATATGCAATGACATTTGGAATATGATTAATTCCC
CATAGTACCA
Protein sequenceShow/hide protein sequence
MGDFSGKMNIEDLLSYGDDLVALLKDQNDVQTLNQCLQHFNALQSSSHDDSRNVHSSVQDYEKKIEECRVKTEEAKARTVADDEMDILEKEIEEEINELDRQRISVQERK
QATKKLEQQELRAQRKLSMYASVTDIIPNMDDHSKISGHIVDRNKRVVQKFELDPTKMSSFDICNDIWNMINSP