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Carg13311 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13311
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S28
Genome locationCarg_Chr07:6306649..6307874
RNA-Seq ExpressionCarg13311
SyntenyCarg13311
Gene Ontology termsGO:0000028 - ribosomal small subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0006508 - proteolysis (biological process)
GO:0030490 - maturation of SSU-rRNA (biological process)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsIPR000289 - Ribosomal protein S28e
IPR012340 - Nucleic acid-binding, OB-fold
IPR028626 - Ribosomal protein S28e conserved site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6595421.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. sororia]4.8e-4481.2Show/hide
Query:  MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE
        MDLHSNPPTQPTWPGPIHFIRNVNPSF+S    + S      S+    +  GMESQIKHA+VVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE
Subjt:  MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE

Query:  GDILTLLESEREARRLR
        GDILTLLESEREARRLR
Subjt:  GDILTLLESEREARRLR

KAG7023246.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]1.5e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

KAG7027430.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]3.6e-60100Show/hide
Query:  MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE
        MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE
Subjt:  MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVRE

Query:  GDILTLLESEREARRLR
        GDILTLLESEREARRLR
Subjt:  GDILTLLESEREARRLR

XP_022922061.1 40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]1.5e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

XP_022922062.1 40S ribosomal protein S28-1-like isoform X2 [Cucurbita moschata]1.5e-26100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

TrEMBL top hitse value%identityAlignment
A0A2P5EA46 Ribosomal protein2.8e-2664.6Show/hide
Query:  SNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL
        S     P+    I+ ++  +PS I   R     F+ L  L L      M+SQ+KHAVVVKVMGRTGSRGQVTQVRVKFLDDQNR+IMRNVKGPVREGDIL
Subjt:  SNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDIL

Query:  TLLESEREARRLR
        TLLESEREARRLR
Subjt:  TLLESEREARRLR

A0A6J1C0B5 40S ribosomal protein S28-1-like1.7e-2678.26Show/hide
Query:  SFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        S +S  R R S F   P          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  SFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1E226 40S ribosomal protein S28-1-like isoform X27.4e-27100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1E336 40S ribosomal protein S28-1-like isoform X17.4e-27100Show/hide
Query:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  GMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

A0A6J1HTG7 40S ribosomal protein S28-13.7e-26100Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

SwissProt top hitse value%identityAlignment
P34789 40S ribosomal protein S28-25.7e-2489.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

P46302 40S ribosomal protein S288.8e-2590.77Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q6PBK3 40S ribosomal protein S281.4e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q90YP3 40S ribosomal protein S281.4e-1980.33Show/hide
Query:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRLR
Subjt:  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Q9SR73 40S ribosomal protein S28-11.5e-2492.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Arabidopsis top hitse value%identityAlignment
AT3G10090.1 Nucleic acid-binding, OB-fold-like protein1.1e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G03850.1 Nucleic acid-binding, OB-fold-like protein1.1e-2592.31Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

AT5G64140.1 ribosomal protein S284.0e-2589.23Show/hide
Query:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR
        M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESEREARRLR
Subjt:  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTT
CTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGC
AGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAG
AGGGAAGCTAGACGGTTGCGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATCTCCATTCCAACCCACCGACCCAACCCACATGGCCCGGCCCAATCCACTTTATAAGAAACGTAAACCCTAGCTTCATATCTTTCTCTCGTTGCCGCACAAGCTT
CTTCGATCGTCTTCCATCTCTTGCTCTCAGGTGTGTTTGGGTAGGAATGGAGTCACAGATCAAGCATGCTGTGGTAGTGAAAGTAATGGGTAGAACTGGATCCAGAGGGC
AGGTGACTCAAGTGAGAGTCAAATTTCTTGATGATCAGAATCGTTACATTATGAGGAATGTGAAGGGACCTGTCAGGGAAGGCGATATTCTTACCCTACTCGAGTCTGAG
AGGGAAGCTAGACGGTTGCGTTGA
Protein sequenceShow/hide protein sequence
MDLHSNPPTQPTWPGPIHFIRNVNPSFISFSRCRTSFFDRLPSLALRCVWVGMESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESE
REARRLR