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Carg13326 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13326
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein 5, chloroplastic-like
Genome locationCarg_Chr07:6472484..6474173
RNA-Seq ExpressionCarg13326
SyntenyCarg13326
Gene Ontology termsGO:0032544 - plastid translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009536 - plastid (cellular component)
InterPro domainsIPR040307 - 50S ribosomal protein 5, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7027445.1 50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]8.3e-70100Show/hide
Query:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK
        MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK
Subjt:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK

Query:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022925196.1 50S ribosomal protein 5, chloroplastic-like [Cucurbita moschata]7.8e-6898.64Show/hide
Query:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK
        MAFLL SNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSE QPPAVPVDKLPLESK
Subjt:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK

Query:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_022966478.1 50S ribosomal protein 5, chloroplastic [Cucurbita maxima]2.9e-6292.52Show/hide
Query:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK
        MA LLCSNPVSTSL SSLFP SPSCFPM SAAQ SML MKPNVFQPK+FNG GLRNPS +ENRSSLIVKAASEIDATVETDSSE QPPAVPVDKLPLESK
Subjt:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK

Query:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_023518173.1 50S ribosomal protein 5, chloroplastic [Cucurbita pepo subsp. pepo]6.6e-6797.28Show/hide
Query:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK
        MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPK+FNG GL NPSFVENRSSLIVKAASEIDATVETDSSE QPPAVPVDKLPLESK
Subjt:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK

Query:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

XP_038881132.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida]1.9e-5079.49Show/hide
Query:  AFLLCSNPVSTSLHSSLF----PPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA------VP
        +FLLCSNP+STSLHS  F     PSPSCFP TSAA S MLLMKP  FQPK+FNG  L  PSFVEN +SLIVKAASEIDA  +TDSSE+QPPA      VP
Subjt:  AFLLCSNPVSTSLHSSLF----PPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA------VP

Query:  VDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        VDKLPLESKLQER EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  VDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

TrEMBL top hitse value%identityAlignment
A0A0A0L3F4 Uncharacterized protein2.5e-4878.95Show/hide
Query:  AFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA------VPVDKL
        +FLL SNP+STS H S   PSPSCFP TSA  SSMLLMKP  FQPK+FNG  LRN SFVEN +SL+VKAASE DAT ETDSS+ QP A      VPVDKL
Subjt:  AFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA------VPVDKL

Query:  PLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PLESKLQER EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  PLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1DNT9 50S ribosomal protein 5, chloroplastic3.5e-5078.34Show/hide
Query:  MAFLLCSNPVSTSLHSSLF----PPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA------V
        MAFLLCSNP+STSL+SS F     PSPSCFP TSAA SS+LLM+P  FQPK FNG  LRN SFVEN +SLIVKA SEID T ETDS+E QPPA      V
Subjt:  MAFLLCSNPVSTSLHSSLF----PPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA------V

Query:  PVDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        PVDKLPLESKLQER EQK RMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  PVDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1EBJ3 50S ribosomal protein 5, chloroplastic-like3.8e-6898.64Show/hide
Query:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK
        MAFLL SNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSE QPPAVPVDKLPLESK
Subjt:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK

Query:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1GE62 50S ribosomal protein 5 alpha, chloroplastic-like3.5e-5077.36Show/hide
Query:  MAFLLCSNPVSTSLHSSLF------PPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA-----
        MAFLLCSNP+S SLHSS F       PSPSCFP   AA +SMLLMKP  FQPK+FNG  LRNPSFVEN  S IVKAASEIDAT ETDS+E +PPA     
Subjt:  MAFLLCSNPVSTSLHSSLF------PPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPA-----

Query:  -VPVDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
         V VDKLPLESKLQER EQKARMKLAKKIRLRRKRLV+KRHLRKKGRWPPSKMKKLKNV
Subjt:  -VPVDKLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

A0A6J1HSA0 50S ribosomal protein 5, chloroplastic1.4e-6292.52Show/hide
Query:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK
        MA LLCSNPVSTSL SSLFP SPSCFPM SAAQ SML MKPNVFQPK+FNG GLRNPS +ENRSSLIVKAASEIDATVETDSSE QPPAVPVDKLPLESK
Subjt:  MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESK

Query:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
Subjt:  LQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

SwissProt top hitse value%identityAlignment
P11891 50S ribosomal protein 5, chloroplastic1.4e-1645.45Show/hide
Query:  LLCSNPVST---SLHSSLFPPSPSCFPMT-------SAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVD
        LLC N  +T   +  SSLF P P+  P++       +       ++ P V +P+       +N  F+   +S    A S +   VE   S+ +   V VD
Subjt:  LLCSNPVST---SLHSSLFPPSPSCFPMT-------SAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVD

Query:  KLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
        KLPLESKL+EREE+  +MKLAKKIRL+RKRLVQKR LRKKG WPPSKMKKL+ V
Subjt:  KLPLESKLQEREEQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

P27684 50S ribosomal protein 5 alpha, chloroplastic2.7e-1547.66Show/hide
Query:  PMTS-AAQSSMLLMKPNVFQPKYFNGFGLR----NPSFVENRSSLI--VKAASEIDATVETDSSETQPPAVPVDKLPLESKLQEREEQKARMKLAKKIRL
        P+TS A  SS   +K           FG R     P   + R +++  V AA+E  A  + D S+ +   + V  LPLESKLQ + EQK +MK+AKKIRL
Subjt:  PMTS-AAQSSMLLMKPNVFQPKYFNGFGLR----NPSFVENRSSLI--VKAASEIDATVETDSSETQPPAVPVDKLPLESKLQEREEQKARMKLAKKIRL

Query:  RRKRLVQKRHLRKKGRWPPSKMKKLKNV
        RR RL++KR LRK+G WPPSKMKKLKNV
Subjt:  RRKRLVQKRHLRKKGRWPPSKMKKLKNV

Q9LER7 50S ribosomal protein 5, chloroplastic2.5e-1648Show/hide
Query:  LLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSE---TQPPAVPVDKLPLESK
        LLC N + +   SSL   S S    + +  S +L +KPN  + K  N   L   S   +   ++VKAA+      E +S E   T   AVPVDKLPLESK
Subjt:  LLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSE---TQPPAVPVDKLPLESK

Query:  LQERE---EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
          + +   E + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LQERE---EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV

Arabidopsis top hitse value%identityAlignment
AT3G56910.1 plastid-specific 50S ribosomal protein 51.7e-1748Show/hide
Query:  LLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSE---TQPPAVPVDKLPLESK
        LLC N + +   SSL   S S    + +  S +L +KPN  + K  N   L   S   +   ++VKAA+      E +S E   T   AVPVDKLPLESK
Subjt:  LLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSE---TQPPAVPVDKLPLESK

Query:  LQERE---EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV
          + +   E + +MKLAKKIRLRRKRLV+KR +RKKGRWPPSKMKK KNV
Subjt:  LQERE---EQKARMKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTTCTCTGCTCCAATCCCGTCTCCACCTCTCTCCATTCATCTCTATTTCCGCCGTCGCCGTCATGTTTTCCGATGACCTCCGCCGCCCAAAGTTCTATGTT
GCTCATGAAGCCTAATGTGTTTCAGCCAAAATATTTCAATGGATTTGGTCTTCGAAACCCCTCCTTTGTTGAAAATAGATCGTCATTGATTGTGAAAGCTGCGTCTGAGA
TTGATGCTACGGTAGAAACAGACAGTAGTGAAACACAGCCCCCTGCAGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGGGAGGAGCAGAAGGCAAGG
ATGAAGCTAGCAAAGAAGATAAGGCTTCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAATTGAAGAATGT
TTGA
mRNA sequenceShow/hide mRNA sequence
AAAACACCATGGCTTTTCTTCTCTGCTCCAATCCCGTCTCCACCTCTCTCCATTCATCTCTATTTCCGCCGTCGCCGTCATGTTTTCCGATGACCTCCGCCGCCCAAAGT
TCTATGTTGCTCATGAAGCCTAATGTGTTTCAGCCAAAATATTTCAATGGATTTGGTCTTCGAAACCCCTCCTTTGTTGAAAATAGATCGTCATTGATTGTGAAAGCTGC
GTCTGAGATTGATGCTACGGTAGAAACAGACAGTAGTGAAACACAGCCCCCTGCAGTTCCAGTTGACAAACTTCCATTAGAATCAAAGCTGCAAGAGAGGGAGGAGCAGA
AGGCAAGGATGAAGCTAGCAAAGAAGATAAGGCTTCGGAGGAAGCGGCTTGTTCAGAAGCGCCATTTGAGGAAGAAGGGACGATGGCCTCCTTCAAAGATGAAGAAATTG
AAGAATGTTTGATAACCAAGCTCCTTCGGCTATTGCAGGTTTAGAGCTTTACCCACTTCTCATTGCTTCTAATATGTTCGTTCTTGCGGATAGATGAACACGACTCTCCA
CAATGGTATGATATTGTCCAATTTGAGCATAAGCTCTCGTGGCTTTGCTTTGGGCTTTCCCAAAAAGCCTCAAATCAATGGAGATAGTATTTTTTAAT
Protein sequenceShow/hide protein sequence
MAFLLCSNPVSTSLHSSLFPPSPSCFPMTSAAQSSMLLMKPNVFQPKYFNGFGLRNPSFVENRSSLIVKAASEIDATVETDSSETQPPAVPVDKLPLESKLQEREEQKAR
MKLAKKIRLRRKRLVQKRHLRKKGRWPPSKMKKLKNV