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Carg13391 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13391
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription factor UPBEAT1
Genome locationCarg_Chr08:2516400..2516780
RNA-Seq ExpressionCarg13391
SyntenyCarg13391
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046707.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]1.6e-1647.62Show/hide
Query:  MGVYPETLLLVQLNMK-----------------EPSQDET-----SMEEQ--QQEQQEAIAKS-------------FNRRRRSSNSLMKKRRSR------
        MGV  ETLL +QLNM+                 + S D++     SM+E+  ++E QE  +K                RRR  SNSL+ K+RSR      
Subjt:  MGVYPETLLLVQLNMK-----------------EPSQDET-----SMEEQ--QQEQQEAIAKS-------------FNRRRRSSNSLMKKRRSR------

Query:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN
         S++RIEQRV+ LRNLVPN +N+ ++ ESC  GSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]2.2e-2664.39Show/hide
Query:  MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLE
        MG +P TLLL+QLNM+EP+QD         ++SMEE+Q+       KS  RRRR+S SL KK R RSSTRI QRV+TLRNLVPNMNN+N+N ++  GSLE
Subjt:  MGVYPETLLLVQLNMKEPSQD---------ETSMEEQQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLE

Query:  QLFTQTADYILSLQTRVRFMKNLVDVLSASSN
        QLFT TADYILSLQTRVRFM+ LVDVLS SS+
Subjt:  QLFTQTADYILSLQTRVRFMKNLVDVLSASSN

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]6.4e-5596.18Show/hide
Query:  MGVYPETLLLVQLNMKEPSQDETSMEEQ-----QQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT
        MGVYPETLLLVQLNMKEPSQDETSMEEQ     QQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT
Subjt:  MGVYPETLLLVQLNMKEPSQDETSMEEQ-----QQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFT

Query:  QTADYILSLQTRVRFMKNLVDVLSASSNDHE
        QTADYILSLQTRVRFMKNLVDVLSASSNDHE
Subjt:  QTADYILSLQTRVRFMKNLVDVLSASSNDHE

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-57100Show/hide
Query:  MGVYPETLLLVQLNMKEPSQDETSMEEQQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADY
        MGVYPETLLLVQLNMKEPSQDETSMEEQQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADY
Subjt:  MGVYPETLLLVQLNMKEPSQDETSMEEQQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADY

Query:  ILSLQTRVRFMKNLVDVLSASSNDHE
        ILSLQTRVRFMKNLVDVLSASSNDHE
Subjt:  ILSLQTRVRFMKNLVDVLSASSNDHE

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]4.8e-1849.08Show/hide
Query:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQQEQQEAIAKS-----------FNRRRRSSNSLMKKRRSR-----SSTRI
        MGV  ETLL +QLNM+  + +QD                    + SM+E++ ++  +  K              RRR  SNSL+ K+RSR     SS+RI
Subjt:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQQEQQEAIAKS-----------FNRRRRSSNSLMKKRRSR-----SSTRI

Query:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN
        EQRV+TLR+LVPN +N+N++   ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN

TrEMBL top hitse value%identityAlignment
A0A0A0K6D9 Uncharacterized protein2.3e-1849.08Show/hide
Query:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQQEQQEAIAKS-----------FNRRRRSSNSLMKKRRSR-----SSTRI
        MGV  ETLL +QLNM+  + +QD                    + SM+E++ ++  +  K              RRR  SNSL+ K+RSR     SS+RI
Subjt:  MGVYPETLLLVQLNMK--EPSQD--------------------ETSMEEQQQEQQEAIAKS-----------FNRRRRSSNSLMKKRRSR-----SSTRI

Query:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN
        EQRV+TLR+LVPN +N+N++   ESCVGSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  EQRVSTLRNLVPNMNNNNNN--HESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN

A0A444XT61 Uncharacterized protein3.3e-0445.16Show/hide
Query:  RRRSSNSLMKK----RRSR-----SSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSNDHE
        R R+   LMK+    RRSR     S+  I+ RV TL+NL+PN +NN          L+ LF +TA+YILSLQ RVR M+ +V VL+ S  D E
Subjt:  RRRSSNSLMKK----RRSR-----SSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSNDHE

A0A445BD20 Uncharacterized protein3.3e-0445.16Show/hide
Query:  RRRSSNSLMKK----RRSR-----SSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSNDHE
        R R+   LMK+    RRSR     S+  I+ RV TL+NL+PN +NN          L+ LF +TA+YILSLQ RVR M+ +V VL+ S  D E
Subjt:  RRRSSNSLMKK----RRSR-----SSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSNDHE

A0A5A7TXU1 Transcription factor UPBEAT17.5e-1747.62Show/hide
Query:  MGVYPETLLLVQLNMK-----------------EPSQDET-----SMEEQ--QQEQQEAIAKS-------------FNRRRRSSNSLMKKRRSR------
        MGV  ETLL +QLNM+                 + S D++     SM+E+  ++E QE  +K                RRR  SNSL+ K+RSR      
Subjt:  MGVYPETLLLVQLNMK-----------------EPSQDET-----SMEEQ--QQEQQEAIAKS-------------FNRRRRSSNSLMKKRRSR------

Query:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN
         S++RIEQRV+ LRNLVPN +N+ ++ ESC  GSLEQLFTQTADYILSLQTRVR MK LVDVLS  S+
Subjt:  -SSTRIEQRVSTLRNLVPNMNNNNNNHESC-VGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSN

A0A7N1A546 Uncharacterized protein1.5e-0444.05Show/hide
Query:  RSSNSLMKKRRSRSSTR---IEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSNDH
        +  N L ++R S  STR     +RV TL+ L+P      N+HE CVG+ + LFT+TADYIL LQ +V+ M+ ++D+LS++S+ H
Subjt:  RSSNSLMKKRRSRSSTR---IEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASSNDH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators1.5e-0437.36Show/hide
Query:  RRRRSSNSLMKK-----RRSRSSTR-----IEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASS
        RR+R+  +L+KK     R+S  ++R     I +RV TL+ LVPN   +          L+ LF QTADYIL+L+ +V+ M+ +V VL+ ++
Subjt:  RRRRSSNSLMKK-----RRSRSSTR-----IEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRFMKNLVDVLSASS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTACCCAGAAACCCTTTTGCTAGTTCAACTCAACATGAAAGAACCATCCCAAGATGAAACATCAATGGAAGAACAACAACAAGAACAACAAGAAGCCATAGC
CAAGAGCTTCAACAGAAGAAGAAGAAGCAGCAACTCATTGATGAAGAAGAGAAGATCAAGATCATCAACTAGAATCGAGCAAAGAGTCAGCACATTAAGAAACCTCGTAC
CAAACATGAACAACAACAACAACAACCATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATATTGTCGCTGCAAACAAGAGTGAGATTC
ATGAAGAATTTGGTTGATGTCTTATCCGCTTCTTCTAATGATCATGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTTACCCAGAAACCCTTTTGCTAGTTCAACTCAACATGAAAGAACCATCCCAAGATGAAACATCAATGGAAGAACAACAACAAGAACAACAAGAAGCCATAGC
CAAGAGCTTCAACAGAAGAAGAAGAAGCAGCAACTCATTGATGAAGAAGAGAAGATCAAGATCATCAACTAGAATCGAGCAAAGAGTCAGCACATTAAGAAACCTCGTAC
CAAACATGAACAACAACAACAACAACCATGAAAGCTGTGTCGGATCATTAGAACAGCTTTTCACTCAAACAGCTGATTACATATTGTCGCTGCAAACAAGAGTGAGATTC
ATGAAGAATTTGGTTGATGTCTTATCCGCTTCTTCTAATGATCATGAGTGA
Protein sequenceShow/hide protein sequence
MGVYPETLLLVQLNMKEPSQDETSMEEQQQEQQEAIAKSFNRRRRSSNSLMKKRRSRSSTRIEQRVSTLRNLVPNMNNNNNNHESCVGSLEQLFTQTADYILSLQTRVRF
MKNLVDVLSASSNDHE