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Carg13415 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13415
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L44
Genome locationCarg_Chr08:2689362..2691185
RNA-Seq ExpressionCarg13415
SyntenyCarg13415
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6383768.1 hypothetical protein SASPL_156461 [Salvia splendens]6.5e-4196.67Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIIL
        VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKVC +L
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIIL

KAG6390038.1 hypothetical protein SASPL_151516 [Salvia splendens]5.0e-4195.6Show/hide
Query:  EVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIIL
        +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKVC +L
Subjt:  EVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIIL

KAG6391799.1 hypothetical protein SASPL_149559 [Salvia splendens]5.0e-4195.6Show/hide
Query:  EVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIIL
        +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKVC +L
Subjt:  EVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIIL

KAG7025625.1 60S ribosomal protein L44, partial [Cucurbita argyrosperma subsp. argyrosperma]3.1e-59100Show/hide
Query:  MEYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIILREL
        MEYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIILREL
Subjt:  MEYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIILREL

Query:  FLDRNLIPLSFNFCFINA
        FLDRNLIPLSFNFCFINA
Subjt:  FLDRNLIPLSFNFCFINA

KZV34690.1 hypothetical protein F511_00592 [Dorcoceras hygrometricum]1.4e-4096.67Show/hide
Query:  SGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        S  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK C
Subjt:  SGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

TrEMBL top hitse value%identityAlignment
A0A2G2XZ44 60S ribosomal protein L449.1e-4193.55Show/hide
Query:  EYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        + K  EVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK C
Subjt:  EYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

A0A2G2Y170 60S ribosomal protein L449.1e-4193.55Show/hide
Query:  MEYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKV
        +E   G VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKV
Subjt:  MEYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKV

A0A6J1KSV1 60S ribosomal protein L441.6e-4098.85Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

A0A7J6E0W3 Uncharacterized protein1.6e-4098.85Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIK C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

A0A7J9JJ62 Uncharacterized protein1.2e-4096.59Show/hide
Query:  EVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        +VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IKVC
Subjt:  EVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

SwissProt top hitse value%identityAlignment
O23290 60S ribosomal protein L36a2.8e-3990.8Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

O59870 60S ribosomal protein L441.4e-3379.31Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +K C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

P0CQ50 60S ribosomal protein L441.8e-3379.31Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q A+K C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

P0CQ51 60S ribosomal protein L441.8e-3379.31Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VN+PKT++TYCK K C+KHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q A+K C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

Q96499 60S ribosomal protein L443.6e-4296.55Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQH IK C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein2.0e-4090.8Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

AT4G14320.1 Zinc-binding ribosomal protein family protein2.0e-4090.8Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC

AT4G14320.2 Zinc-binding ribosomal protein family protein2.0e-4090.8Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC
        VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ  IK C
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVC


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGTATAAAAGTGGAGAGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGG
CAAGGATAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGAGGCCAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGA
TTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGGTTTGTATTATCTTACGTGAACTCTTCTTGGATAGAAACTTAATACCATTGTCT
TTCAATTTCTGTTTCATTAATGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGTATAAAAGTGGAGAGGTGAACGTTCCCAAGACGAAGAAGACTTACTGCAAGAGCAAGGAATGCAAAAAGCATACCTTGCACAAGGTTACCCAGTACAAAAAGGG
CAAGGATAGTCTTGCTGCCCAAGGAAAGCGTCGTTATGATCGTAAACAATCAGGATACGGAGGCCAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGA
TTGTGCTGAGGTTGCAATGCCAGGGTTGCAAGCATGTGTCACAGCATGCCATTAAGGTTTGTATTATCTTACGTGAACTCTTCTTGGATAGAAACTTAATACCATTGTCT
TTCAATTTCTGTTTCATTAATGCCTAGCTTCACATTTATGCAGAGATGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGAAAGGGAACTTCACTTTTTTAGATGCTTT
AACATTGTCATTCACTATATATTGGTTTTTAGGGAGCCAAAATTGTGGGTTTCTTCTGCCCTATGCTTTTTGTTTGGTTATTCTGATATTTGTGAACACTTTTACCTCTT
GAATTTTGTTTAATGCATCAGCTTATAATGGAACAACTAGCTAGCCTCTTCCATTTTTCTGTTTATCACTTGTTTTAACTCCATAGTTCATTTTTCTTTCTTCGTTAACA
ATTGCTATAAGTTCATATTTTGGCAATTTGCTTGTGCTCTATCCTACCTTGTTGAATTTGTTTATTGTGGCAGTTACCATTTCTGATGCTTTTATAAGGATTTGACATCC
ATTCTCGCATATCATAGCCTGTGTTTATCAAGAATATTAGTTTCTTTATATTTTATCTTCACCTTTTGAGTTTCCTTATATTGTTATTGATTTTTCTTTTCTAACGCAAG
CATGTGCAGAAAACATTCTTGACTTGTAATGTTTGATCTATGATCCTGTAAATTTACGTGAAATGATGAATGCACATAAGAAAATTTGGG
Protein sequenceShow/hide protein sequence
MEYKSGEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHAIKVCIILRELFLDRNLIPLS
FNFCFINA