CuGenDBv2

Gene ID	Carg13421
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	F-box/WD-40 repeat-containing protein
Genome location	Carg_Chr08:2714825..2717701
RNA-Seq Expression	Carg13421
Synteny	Carg13421
Gene Ontology terms	GO:0051568 - histone H3-K4 methylation (biological process) GO:0048188 - Set1C/COMPASS complex (cellular component) GO:0042393 - histone binding (molecular function)
InterPro domains	IPR001680 - WD40 repeat IPR015943 - WD40/YVTN repeat-like-containing domain superfamily IPR036322 - WD40-repeat-containing domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6593280.1 F-box/WD-40 repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]

5.1e-170

100

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

KAG7025631.1 F-box/WD-40 repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.7e-181

100

Show/hide

Query:  MEYFLHYIQACMRDWDVMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAH
        MEYFLHYIQACMRDWDVMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAH
Subjt:  MEYFLHYIQACMRDWDVMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAH

Query:  VFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVS
        VFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVS
Subjt:  VFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVS

Query:  PNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKF
        PNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKF
Subjt:  PNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKF

Query:  IRLWKFRN
        IRLWKFRN
Subjt:  IRLWKFRN

XP_022960484.1 F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita moschata]

1.1e-169

99.66

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

XP_023513731.1 F-box/WD-40 repeat-containing protein At3g52030 isoform X1 [Cucurbita pepo subsp. pepo]

1.1e-169

99.66

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

XP_023513732.1 F-box/WD-40 repeat-containing protein At3g52030 isoform X2 [Cucurbita pepo subsp. pepo]

1.1e-169

99.66

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D9T6 F-box/WD-40 repeat-containing protein At3g52030 isoform X2

1.8e-152

89.04

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIP K+PL+DFDFDE KIVGLVGR +CIWSRSGKRSIFPSRECTF +G CMRYFDPEAVVGC DGTAHVFDMYSRRCSRI+RML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCV DDQLILGGS+ GNIGVSGL SDQRVAMLRSRNT+GI+T+CYNASSHLVFAGSTAGHVYCWDLRTMK LWESRVSPN+VYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRIL+QNTGTVRS CI+DSRLLSTYQ+G+GVVEERIG R+S ETPIDAI+RR+RP ITSLAVGMNKIVTTHNDKFIRLWKF+N
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

A0A6J1H972 F-box/WD-40 repeat-containing protein At3g52030 isoform X2

5.5e-170

99.66

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

A0A6J1HB56 F-box/WD-40 repeat-containing protein At3g52030 isoform X1

5.5e-170

99.66

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

A0A6J1KQQ9 F-box/WD-40 repeat-containing protein At3g52030 isoform X2

9.3e-170

99.32

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRN+CIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

A0A6J1KSE3 F-box/WD-40 repeat-containing protein At3g52030 isoform X1

9.3e-170

99.32

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRN+CIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
        PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSS

Query:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
        LAVGGIDGILRILDQNTGTVRSGCI+DSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN
Subjt:  LAVGGIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

SwissProt top hits

e value

%identity

Alignment

Q9SV01 F-box/WD-40 repeat-containing protein At3g52030

3.0e-88

52.08

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESK---------------------IVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCG
        VMRLWS ++++C+EEYS+P+   LIDFDFDESK                     IVGLVG  + IW R+G+RSIFPSR  TF +G CMRY DPEAVVGC 
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESK---------------------IVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCG

Query:  DGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPL
        DGTA VFDMYS+ CS+I+R   GP+TCL + D+QL L GS  G + VS    DQ VA L+S  T  GI+T+C+N  ++L F G+T G+V CWDLR M  L
Subjt:  DGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPL

Query:  WESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIV
        WE RVSPNVVYS++ L+ND S +  GGIDG+LR++DQ +G V S  I+D +  +T  ++   V+E+R G R+S +  ID I R+ RP I+ +A+GM K+V
Subjt:  WESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIV

Query:  TTHNDKFIRLWKF
        T HN K I +WKF
Subjt:  TTHNDKFIRLWKF

Arabidopsis top hits

e value

%identity

Alignment

AT3G52030.1 F-box family protein with WD40/YVTN repeat doamin

2.1e-89

52.08

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESK---------------------IVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCG
        VMRLWS ++++C+EEYS+P+   LIDFDFDESK                     IVGLVG  + IW R+G+RSIFPSR  TF +G CMRY DPEAVVGC 
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESK---------------------IVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCG

Query:  DGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPL
        DGTA VFDMYS+ CS+I+R   GP+TCL + D+QL L GS  G + VS    DQ VA L+S  T  GI+T+C+N  ++L F G+T G+V CWDLR M  L
Subjt:  DGTAHVFDMYSRRCSRIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPL

Query:  WESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIV
        WE RVSPNVVYS++ L+ND S +  GGIDG+LR++DQ +G V S  I+D +  +T  ++   V+E+R G R+S +  ID I R+ RP I+ +A+GM K+V
Subjt:  WESRVSPNVVYSLRHLQNDRSSLAVGGIDGILRILDQNTGTVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIV

Query:  TTHNDKFIRLWKF
        T HN K I +WKF
Subjt:  TTHNDKFIRLWKF

AT3G52030.2 F-box family protein with WD40/YVTN repeat doamin

4.1e-93

55.82

Show/hide

Query:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML
        VMRLWS ++++C+EEYS+P+   LIDFDFDESKIVGLVG  + IW R+G+RSIFPSR  TF +G CMRY DPEAVVGC DGTA VFDMYS+ CS+I+R  
Subjt:  VMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCSRIVRML

Query:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRS
         GP+TCL + D+QL L GS  G + VS    DQ VA L+S  T  GI+T+C+N  ++L F G+T G+V CWDLR M  LWE RVSPNVVYS++ L+ND S
Subjt:  PGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTI-GIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRS

Query:  SLAVGGIDGILRILDQNTGTVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKF
         +  GGIDG+LR++DQ +G V S  I+D +  +T  ++   V+E+R G R+S +  ID I R+ RP I+ +A+GM K+VT HN K I +WKF
Subjt:  SLAVGGIDGILRILDQNTGTVRSGCIVDSRLLST-YQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGAGTACTTCCTACATTACATTCAAGCGTGCATGAGAGATTGGGATGTTATGAGACTTTGGTCGTCGGAGAACTTCAGATGTCTGGAAGAATATTCCATTCCGGAGAA
ACTGCCTCTAATTGACTTTGATTTTGATGAGAGCAAGATTGTTGGTTTGGTTGGTAGAAACTTGTGCATTTGGAGTCGGAGTGGGAAACGAAGTATATTTCCTTCGCGTG
AATGTACGTTTGTGGAGGGTTCATGTATGCGTTACTTTGATCCGGAGGCTGTTGTTGGTTGTGGAGATGGAACAGCTCATGTATTCGACATGTATAGTAGGAGATGCTCT
AGAATTGTCAGGATGCTTCCTGGGCCAGTGACATGCTTATGTGTGGGTGATGATCAGCTCATACTTGGGGGTTCCCTTCATGGAAACATTGGAGTATCGGGTCTTCGGTC
TGATCAGCGGGTAGCAATGCTTAGATCAAGAAATACCATAGGCATAAAGACCATGTGTTACAATGCTTCTTCACATTTAGTCTTTGCGGGATCAACTGCCGGACATGTCT
ATTGTTGGGACCTCAGGACAATGAAACCTTTATGGGAATCCCGAGTGAGCCCAAATGTCGTATATTCTTTACGACACCTCCAAAATGACAGGTCAAGTTTGGCTGTTGGT
GGAATAGATGGCATTCTACGTATTTTGGATCAGAATACAGGCACGGTGCGGTCGGGTTGTATTGTGGATAGTAGACTGTTATCGACGTATCAGAGCGGGGTTGGAGTCGT
GGAAGAAAGGATAGGAAATAGACTGTCAGATGAAACTCCTATTGATGCCATACACAGAAGGAGTAGGCCTCCGATCACAAGCTTAGCCGTTGGGATGAACAAGATAGTCA
CAACGCACAACGACAAGTTCATTAGATTATGGAAGTTCCGAAACTAG

mRNA sequence

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Protein sequence

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MEYFLHYIQACMRDWDVMRLWSSENFRCLEEYSIPEKLPLIDFDFDESKIVGLVGRNLCIWSRSGKRSIFPSRECTFVEGSCMRYFDPEAVVGCGDGTAHVFDMYSRRCS
RIVRMLPGPVTCLCVGDDQLILGGSLHGNIGVSGLRSDQRVAMLRSRNTIGIKTMCYNASSHLVFAGSTAGHVYCWDLRTMKPLWESRVSPNVVYSLRHLQNDRSSLAVG
GIDGILRILDQNTGTVRSGCIVDSRLLSTYQSGVGVVEERIGNRLSDETPIDAIHRRSRPPITSLAVGMNKIVTTHNDKFIRLWKFRN

Carg13421 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome