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Carg13455 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13455
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSpoU_methylase domain-containing protein
Genome locationCarg_Chr08:2922150..2924194
RNA-Seq ExpressionCarg13455
SyntenyCarg13455
Gene Ontology termsGO:0002131 - wobble position cytosine ribose methylation (biological process)
GO:0002132 - wobble position uridine ribose methylation (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0008173 - RNA methyltransferase activity (molecular function)
InterPro domainsIPR001537 - tRNA/rRNA methyltransferase, SpoU type
IPR016914 - tRNA (cytidine/uridine-2'-O-)-methyltransferase
IPR029026 - tRNA (guanine-N1-)-methyltransferase, N-terminal
IPR029028 - Alpha/beta knot methyltransferases


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593315.1 hypothetical protein SDJN03_12791, partial [Cucurbita argyrosperma subsp. sororia]4.4e-7198.56Show/hide
Query:  MDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGS
        MDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGS
Subjt:  MDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGS

Query:  IARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        IARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY +
Subjt:  IARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

KAG7025665.1 hypothetical protein SDJN02_12162 [Cucurbita argyrosperma subsp. argyrosperma]7.0e-77100Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPIGIQVL
        TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPIGIQVL
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPIGIQVL

XP_022959577.1 uncharacterized protein LOC111460609 [Cucurbita moschata]5.7e-7196.48Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTTATTLRTLHPFSPFLLRASTSHR LRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVG+ALNGVSQQKVLQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDD KLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

XP_023004870.1 uncharacterized protein LOC111498049 [Cucurbita maxima]8.8e-7297.18Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTTATTLRTLHPFSPFLLR+STSHR LRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

XP_023514221.1 uncharacterized protein LOC111778552 [Cucurbita pepo subsp. pepo]2.8e-7096.48Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTTATTLRTLHPFSPFLLRASTSHR LRARCFSHFSHKHRH CSSSSRRLLPFCS SEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

TrEMBL top hitse value%identityAlignment
A0A0A0K6L9 SpoU_methylase domain-containing protein2.1e-5076.76Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTT  TLR L+PF+PF LR+S S   LR R FS F++KH +  SSS RRLLPFCS S++ EG SGSLP GVGEA+NGVS  K+LQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

A0A1S3CFJ1 putative tRNA (Cytidine(34)-2'-O)-methyltransferase2.0e-5378.87Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTT  TLRTL+PF+PF  R+S SH  LR   FS F++KH +P SSSSRRLLPFCS SE+ EG SGSLP GVGEA+NGVS  K+LQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

A0A5D3CFA4 Putative tRNA (Cytidine(34)-2'-O)-methyltransferase2.0e-5378.87Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTT  TLRTL+PF+PF  R+S SH  LR   FS F++KH +P SSSSRRLLPFCS SE+ EG SGSLP GVGEA+NGVS  K+LQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

A0A6J1H4X6 uncharacterized protein LOC1114606092.8e-7196.48Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTTATTLRTLHPFSPFLLRASTSHR LRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVG+ALNGVSQQKVLQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDD KLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

A0A6J1KVT5 uncharacterized protein LOC1114980494.3e-7297.18Show/hide
Query:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
        MPLMDTTATTLRTLHPFSPFLLR+STSHR LRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN
Subjt:  MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGN

Query:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY +
Subjt:  TGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

SwissProt top hitse value%identityAlignment
O31590 Putative tRNA (cytidine(34)-2'-O)-methyltransferase1.9e-1366.04Show/hide
Query:  LQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY
        L VVL  P IP NTG+IARTCAA+   LHL+ PLGF  DD  LKRAGLDYW +
Subjt:  LQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY

P32813 Putative tRNA (cytidine(34)-2'-O)-methyltransferase2.5e-1364.15Show/hide
Query:  LQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY
        L VVL  P IP NTG+IARTCAA+   LHL+ PLGF  DD  L+RAGLDYW +
Subjt:  LQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY

P74516 Putative tRNA (cytidine(34)-2'-O)-methyltransferase2.1e-1568.52Show/hide
Query:  VLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY
        ++++VLV+P IP NTG+IARTCAA+   LHLVGPLGF++ D  LKRAGLDYWPY
Subjt:  VLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPY

Q042B4 Putative RNA (cytidine(34)-2'-O)-methyltransferase1.1e-1163.27Show/hide
Query:  VVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYW
        VVL  PL+P NTG+IARTCA +   L L+ PLGF++D+ K+KRAGLDYW
Subjt:  VVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYW

Q48V41 Putative tRNA (cytidine(34)-2'-O)-methyltransferase1.3e-1263.27Show/hide
Query:  VVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYW
        +VL  P IP NTG+IARTCAA+   LH++ P+GF +DD K+KRAGLDYW
Subjt:  VVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYW

Arabidopsis top hitse value%identityAlignment
AT5G26880.1 AGAMOUS-like 261.0e-2572.22Show/hide
Query:  LPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        LPRG GE +   ++ K+L VVLVSP IPGNTG IARTCAASAVGLHLVGPLGF+VDD ++KRAGLDYWP+ +
Subjt:  LPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI

AT5G26880.2 AGAMOUS-like 261.0e-2572.22Show/hide
Query:  LPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI
        LPRG GE +   ++ K+L VVLVSP IPGNTG IARTCAASAVGLHLVGPLGF+VDD ++KRAGLDYWP+ +
Subjt:  LPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAASAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCATTAATGGATACAACAGCGACCACTCTTAGAACATTGCACCCATTTTCGCCCTTTCTACTACGCGCATCGACGTCTCATCGTTTTCTTCGCGCTCGCTGCTTCTC
CCATTTCAGCCACAAACACCGCCATCCGTGTTCTTCCTCCTCTCGCCGCCTCCTCCCCTTCTGCTCCTTCTCTGAAAAAGGGGAGGGTTCATCCGGTTCTCTGCCGCGCG
GTGTTGGTGAGGCCCTAAATGGGGTTTCGCAGCAGAAGGTTCTTCAAGTTGTGTTGGTTTCTCCCCTGATTCCTGGGAACACTGGTAGCATTGCCAGAACATGTGCTGCA
TCAGCTGTTGGACTACATCTAGTTGGGCCATTGGGATTTAAGGTGGACGACACGAAGCTAAAGCGTGCTGGTTTGGATTACTGGCCGTATCCCATAGGAATTCAAGTTCT
TTGA
mRNA sequenceShow/hide mRNA sequence
AATTTTTATTTTTAATTATTATTATTATTATTTCGGATGTTTTAGGCACAAGATAAGTCGAATGGAAGAGCAGCAACCATGACTGAGCTCTGAAACGAGCTCTTAGAAGA
CCTGAGCAGCTCGACAGAGAGGCGCGCAGTACGGCAGAAGAGCGGCGGCGACAAGAAGAAGATTGCTCTGCTAAGATGCCATTAATGGATACAACAGCGACCACTCTTAG
AACATTGCACCCATTTTCGCCCTTTCTACTACGCGCATCGACGTCTCATCGTTTTCTTCGCGCTCGCTGCTTCTCCCATTTCAGCCACAAACACCGCCATCCGTGTTCTT
CCTCCTCTCGCCGCCTCCTCCCCTTCTGCTCCTTCTCTGAAAAAGGGGAGGGTTCATCCGGTTCTCTGCCGCGCGGTGTTGGTGAGGCCCTAAATGGGGTTTCGCAGCAG
AAGGTTCTTCAAGTTGTGTTGGTTTCTCCCCTGATTCCTGGGAACACTGGTAGCATTGCCAGAACATGTGCTGCATCAGCTGTTGGACTACATCTAGTTGGGCCATTGGG
ATTTAAGGTGGACGACACGAAGCTAAAGCGTGCTGGTTTGGATTACTGGCCGTATCCCATAGGAATTCAAGTTCTTTGA
Protein sequenceShow/hide protein sequence
MPLMDTTATTLRTLHPFSPFLLRASTSHRFLRARCFSHFSHKHRHPCSSSSRRLLPFCSFSEKGEGSSGSLPRGVGEALNGVSQQKVLQVVLVSPLIPGNTGSIARTCAA
SAVGLHLVGPLGFKVDDTKLKRAGLDYWPYPIGIQVL