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Carg13474 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13474
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionCCR4-NOT transcription complex subunit like
Genome locationCarg_Chr08:3001453..3003111
RNA-Seq ExpressionCarg13474
SyntenyCarg13474
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593336.1 hypothetical protein SDJN03_12812, partial [Cucurbita argyrosperma subsp. sororia]1.6e-5899.21Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSLVLWIVSSSVTTLIALVVKLISTK
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

KAG7025683.1 hypothetical protein SDJN02_12181 [Cucurbita argyrosperma subsp. argyrosperma]5.6e-59100Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSLVLWIVSSSVTTLIALVVKLISTK
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

XP_022959607.1 uncharacterized protein LOC111460632 [Cucurbita moschata]3.4e-5696.03Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSFSITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSLVLWIVSSSVTTLIAL VKLISTK
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

XP_023004845.1 uncharacterized protein LOC111498025 [Cucurbita maxima]3.4e-5696.03Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSFSITASNSSDGNSTKE+NDGSKVT DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSLVLWIVSSSVTTLIALVVKLISTK
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

XP_023513743.1 uncharacterized protein LOC111778262 isoform X3 [Cucurbita pepo subsp. pepo]4.9e-5595.24Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTK L+LRQRSFSITASNSSDGNSTKEK DGSKVT DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSLVLWIVSSSVTTLIALVVKLISTK
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

TrEMBL top hitse value%identityAlignment
A0A6J1CV15 uncharacterized protein LOC1110150327.7e-3869.84Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MAS+FAAPPSQ++L S R S + +A LPSIVGVK H +GFP+PSFR+++TKGLEL QRSFSITASNSSDGNS KE     + T DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSL++W++SS+ T+LI LVVKLI  K
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

A0A6J1GPL5 uncharacterized protein LOC1114559841.7e-4074.8Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFF
        MAS+F+APPS+++L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGLELRQRSFSITASNSSDGNS KE+N  SK +SDAQGPPFLTILAG F
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFF

Query:  VFSLVLWIVSSSVTTLIALVVKLISTK
        VFSL+LW++SS+ T+LI LVVKLISTK
Subjt:  VFSLVLWIVSSSVTTLIALVVKLISTK

A0A6J1H506 uncharacterized protein LOC1114606321.7e-5696.03Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSFSITASNSSDGNSTKEKNDGSKVT DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSLVLWIVSSSVTTLIAL VKLISTK
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

A0A6J1JUC2 uncharacterized protein LOC1114884362.0e-3873.02Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFF
        MAS+FAAPPS+++L+S RPSL H A LP SI G+++H N FPIPSFRY+NTKGLEL  RSFSITASNSSDGNS +E+N  SK +SDAQGPPFLTILAG F
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLP-SIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFF

Query:  VFSLVLWIVSSSVTTLIALVVKLIST
        VFSL+LW++SS+ T+LI LVVKLIST
Subjt:  VFSLVLWIVSSSVTTLIALVVKLIST

A0A6J1KVQ7 uncharacterized protein LOC1114980251.7e-5696.03Show/hide
Query:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV
        MASVFAAPPSQ+ LSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGL+LRQRSFSITASNSSDGNSTKE+NDGSKVT DAQGPPFLTILAGFFV
Subjt:  MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFV

Query:  FSLVLWIVSSSVTTLIALVVKLISTK
        FSLVLWIVSSSVTTLIALVVKLISTK
Subjt:  FSLVLWIVSSSVTTLIALVVKLISTK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGCCTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCG
GAATGGCTTTCCAATTCCTTCTTTCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTATAACAGCATCAAATTCCTCAGATGGGAATTCCACCA
AGGAGAAAAATGATGGAAGTAAAGTAACAAGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTTTTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCC
TCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA
mRNA sequenceShow/hide mRNA sequence
AAAGATAATAAAATAGAATATTCTTCCAAGTAGATAACAAAAATAGACGTGAATTATGAATGGATCATCCACACCCTCCGTGCCGCATCTCGTGCGAATCTCCTCTTCCG
AAGTTGACGAAGTCGTTGTAACAAGACTGAAGGTGAATGGCTTCCGTCTTCGCCGCGCCGCCGTCTCAAGTGGATCTCTCTTCTCACCGCCCAAGTTTGGATCACAAAGC
CTTTCTTCCTTCCATCGTCGGCGTTAAATTTCATCGGAATGGCTTTCCAATTCCTTCTTTCAGGTACAAGAACACCAAAGGATTGGAATTGAGGCAAAGATCTTTTTCTA
TAACAGCATCAAATTCCTCAGATGGGAATTCCACCAAGGAGAAAAATGATGGAAGTAAAGTAACAAGTGATGCCCAAGGTCCTCCATTTCTTACCATTTTGGCTGGATTT
TTTGTCTTTTCCCTCGTCCTTTGGATAGTCAGTTCCTCTGTCACAACCCTTATAGCTCTAGTCGTCAAGTTGATCTCAACAAAGTAA
Protein sequenceShow/hide protein sequence
MASVFAAPPSQVDLSSHRPSLDHKAFLPSIVGVKFHRNGFPIPSFRYKNTKGLELRQRSFSITASNSSDGNSTKEKNDGSKVTSDAQGPPFLTILAGFFVFSLVLWIVSS
SVTTLIALVVKLISTK