CuGenDBv2

Gene ID	Carg13502
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosynthetic NDH subunit of subcomplex B 1, chloroplastic
Genome location	Carg_Chr08:3154714..3155878
RNA-Seq Expression	Carg13502
Synteny	Carg13502
Gene Ontology terms	GO:0009773 - photosynthetic electron transport in photosystem I (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
InterPro domains	IPR044983 - Photosynthetic NDH subunit of subcomplex B 1, chloroplastic

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0058709.1 photosynthetic NDH subunit of subcomplex B 1 [Cucumis melo var. makuwa]

2.3e-11

84.44

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

KAG7025711.1 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.3e-41

100

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Query:  MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR
        MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR
Subjt:  MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR

XP_004136098.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis sativus]

1.4e-11

86.67

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAGLGHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

XP_008461180.1 PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Cucumis melo]

2.3e-11

84.44

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

XP_038896546.1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Benincasa hispida]

1.4e-11

86.67

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAGLGHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K6S9 Uncharacterized protein

6.6e-12

86.67

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAGLGHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

A0A1S3CEK1 photosynthetic NDH subunit of subcomplex B 1, chloroplastic

1.1e-11

84.44

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

A0A392NQR7 Uncharacterized protein (Fragment)

2.5e-11

53.85

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDA--FKAHFLDLGTMRPYRSL
        +YY MVLSTKLAG+GHA +L MT ARDRVSYVY +VNAAGAGLFL        P + +      H ++    RP+RS+
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDA--FKAHFLDLGTMRPYRSL

A0A5A7UYW0 Photosynthetic NDH subunit of subcomplex B 1

1.1e-11

84.44

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

A0A6J1CV27 photosynthetic NDH subunit of subcomplex B 1, chloroplastic

1.5e-11

84.44

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL
        +YY MVLSTKLAG+GHAVFL MT ARDRVSY+Y DVNAAGAGLFL
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL

SwissProt top hits

e value

%identity

Alignment

Q9S9N6 Photosynthetic NDH subunit of subcomplex B 1, chloroplastic

5.8e-13

53.66

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR
        +YY MVLSTKLAGLGHA FL MT ARDRVSY+Y +VN+AGAGL L     +++ N   L +  +      LG  RP+RS+ R
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR

Arabidopsis top hits

e value

%identity

Alignment

AT1G15980.1 NDH-dependent cyclic electron flow 1

4.1e-14

53.66

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Query:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR
        +YY MVLSTKLAGLGHA FL MT ARDRVSY+Y +VN+AGAGL L     +++ N   L +  +      LG  RP+RS+ R
Subjt:  QYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFL----VSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR

Sequences

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CDS sequence

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ATGAAGCTCACCAATCAGTTCGAGATCTACCAGTACTATGGCATGGTCTTGTCAACCAAGCTAGCAGGGCTTGGACATGCAGTGTTTTTGTTAATGACAGCAGCCAGAGA
CAGGGTGAGCTACGTTTATCTAGACGTGAATGCAGCTGGAGCAGGGCTTTTTCTTGTCTCAAAACATTTAAACCAAATGCCTCTAATCTTTGATGCCTTCAAGGCTCATT
TTCTTGATTTGGGTACCATGAGGCCCTATCGCAGCCTTCTCAGGTAG

mRNA sequence

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Protein sequence

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MKLTNQFEIYQYYGMVLSTKLAGLGHAVFLLMTAARDRVSYVYLDVNAAGAGLFLVSKHLNQMPLIFDAFKAHFLDLGTMRPYRSLLR

Carg13502 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome