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Carg13506 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13506
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionZinc finger protein 3
Genome locationCarg_Chr08:3177508..3178375
RNA-Seq ExpressionCarg13506
SyntenyCarg13506
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575625.1 Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. sororia]1.3e-3158.54Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASP
        +  HQNA+ R RK AK  HKL  N       SV +L  QGF++SLGIQ HS+IHKP S+AP+ GSFHPF+P+VWD QPLY QVA G+W   +NY SGASP
Subjt:  MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASP

Query:  VLPSGRGAARFDGDMALSPNRDS
        VLPS  GA  FDG   LS N D+
Subjt:  VLPSGRGAARFDGDMALSPNRDS
KAG6593367.1 hypothetical protein SDJN03_12843, partial [Cucurbita argyrosperma subsp. sororia]4.9e-6099.15Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR
        MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFE DVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR
Subjt:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR

Query:  GAARFDGDMALSPNRDS
        GAARFDGDMALSPNRDS
Subjt:  GAARFDGDMALSPNRDS
KAG7014175.1 Zinc finger protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma]2.2e-3159.35Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASP
        +  HQNA+ R RK AK  HKL  N       SV +L  QGF++SLGIQ HS+IHKP S+AP+ GSFHPFE +VWD QPLY QVA G+W   +NY SGASP
Subjt:  MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASP

Query:  VLPSGRGAARFDGDMALSPNRDS
        VLPS  GAA FDG   LS N D+
Subjt:  VLPSGRGAARFDGDMALSPNRDS
KAG7025715.1 hypothetical protein SDJN02_12213, partial [Cucurbita argyrosperma subsp. argyrosperma]6.7e-65100Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR
        MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR
Subjt:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR

Query:  GAARFDGDMALSPNRDSCRLIH
        GAARFDGDMALSPNRDSCRLIH
Subjt:  GAARFDGDMALSPNRDSCRLIH
XP_023548450.1 zinc finger protein 3-like [Cucurbita pepo subsp. pepo]5.3e-3058.54Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASP
        +  HQNA+ R RK+A+T HKL  N       SV +L  QGF++SLGIQ HS+IHKP S+AP+ GSF  FE  VWD QPLY QVA+G W   ENY SGASP
Subjt:  MDSHQNAYRRDRKVAKTPHKLGIN------PSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASP

Query:  VLPSGRGAARFDGDMALSPNRDS
        VLPS  GAA FDG   LS N D+
Subjt:  VLPSGRGAARFDGDMALSPNRDS
TrEMBL top hitse value%identityAlignment
A0A0A0K8M2 C2H2-type domain-containing protein5.8e-2248.82Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR
        +  HQNA+ R+RK+AKT +K+  N + C      +SKSLGIQA S+IHKP S++ + GSFHPF+ +    Q LY+QVAAGQW S +NYLS  SPV PS  
Subjt:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR

Query:  GAARFDG-----DMALSPNRDSCRLIH
        GA    G     D  L  NR +C  +H
Subjt:  GAARFDG-----DMALSPNRDSCRLIH
A0A1S3CEM5 zinc finger protein 11.5e-2248Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR
        +  HQNA+ R+RK+AKT  K+  N + C      +SKSLGIQA S+IHKP SY+P+ GSFHPF+ +  + Q LY+Q+AAGQW S +NYLS  SPV PS  
Subjt:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR

Query:  GAARFDG---DMALSPNRDSCRLIH
        GA    G   + +L  ++ +C  +H
Subjt:  GAARFDG---DMALSPNRDSCRLIH
A0A5D3CH42 Zinc finger protein 11.2e-2248Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR
        +  HQNA+ R+RK+AKT  K+  N + C      +SKSLGIQA S+IHKP SY+P+ GSFHPF+ +  + Q LY+Q+AAGQW S +NYLS  SPV PS  
Subjt:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGR

Query:  GAARFDG---DMALSPNRDSCRLIH
        GA    G   + +L  ++ +C  +H
Subjt:  GAARFDG---DMALSPNRDSCRLIH
A0A6A4M340 C2H2-type domain-containing protein (Fragment)6.0e-1142.37Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGI----NPSVCALALQG-FSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPV
        +  HQNA++R+R +AK   K+G      PS+ +L L G  ++SLGIQ HS+I+KP+     IGS H      W   P+ +Q A G+ A  ENY  G S  
Subjt:  MDSHQNAYRRDRKVAKTPHKLGI----NPSVCALALQG-FSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPV

Query:  LPSGRGAARFDGDMALSP
          S  GAARFDG    SP
Subjt:  LPSGRGAARFDGDMALSP
A0A6J1DKR7 zinc finger protein 1-like2.6e-2253.23Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLG------INPSVCALALQGFSKSLGIQAHSVIHKP-SSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGAS
        +  HQNA+ R RK+AK   KL          SV +++L GF++SLGIQAH++I KP +S+API GSFHP E DVWD Q LY ++AAG+  S E++LSG S
Subjt:  MDSHQNAYRRDRKVAKTPHKLG------INPSVCALALQGFSKSLGIQAHSVIHKP-SSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGAS

Query:  PVLPSGRGAARFDGDMALSPNRDS
         V  S RGAARFDG   LSP   S
Subjt:  PVLPSGRGAARFDGDMALSPNRDS
SwissProt top hitse value%identityAlignment
Q39262 Zinc finger protein 33.3e-0633.33Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFS-----------KSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENY
        +  HQNA++R+R +AK   ++  + S       GFS           +SLGIQAHS+ HK SSY    G +       W   P  +Q A G++ S++N+
Subjt:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFS-----------KSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENY
Arabidopsis top hitse value%identityAlignment
AT5G10970.1 C2H2 and C2HC zinc fingers superfamily protein3.0e-0732.23Show/hide
Query:  MDSHQNAYRRDRKVAKT----------PHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLS
        +  HQNA++R+R +AK            H  G  P       Q  +++LGIQAHS+ HKPSSY    G +       W   PL +Q A  +  S EN+ +
Subjt:  MDSHQNAYRRDRKVAKT----------PHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLS

Query:  G-----ASPVLPSGRGAARFD
              A P+  +     RFD
Subjt:  G-----ASPVLPSGRGAARFD
AT5G25160.1 zinc finger protein 32.3e-0733.33Show/hide
Query:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFS-----------KSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENY
        +  HQNA++R+R +AK   ++  + S       GFS           +SLGIQAHS+ HK SSY    G +       W   P  +Q A G++ S++N+
Subjt:  MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFS-----------KSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAA
ATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTT
ACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCG
CTGTCACCTAATAGAGACTCGTGTCGATTAATCCACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATAGCCACCAAAATGCTTACAGGCGAGACAGAAAAGTGGCTAAAACACCTCATAAGTTGGGTATCAATCCGAGCGTGTGCGCTCTTGCTCTGCAGGGCTTCAGTAA
ATCACTTGGAATTCAAGCGCATTCAGTGATTCACAAGCCTTCTTCATATGCACCAATTATTGGTTCCTTTCATCCTTTTGAGCCTGATGTCTGGGACATGCAGCCTCTTT
ACAAGCAAGTGGCAGCTGGCCAATGGGCATCGCTGGAGAATTATCTGTCGGGGGCCTCACCAGTACTGCCATCAGGCAGGGGAGCAGCAAGGTTTGACGGCGACATGGCG
CTGTCACCTAATAGAGACTCGTGTCGATTAATCCACTAG
Protein sequenceShow/hide protein sequence
MDSHQNAYRRDRKVAKTPHKLGINPSVCALALQGFSKSLGIQAHSVIHKPSSYAPIIGSFHPFEPDVWDMQPLYKQVAAGQWASLENYLSGASPVLPSGRGAARFDGDMA
LSPNRDSCRLIH