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Carg13514 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13514
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L30
Genome locationCarg_Chr02:915082..916155
RNA-Seq ExpressionCarg13514
SyntenyCarg13514
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0015934 - large ribosomal subunit (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR005996 - Ribosomal protein L30, bacterial-type
IPR016082 - Ribosomal protein L30, ferredoxin-like fold domain
IPR036919 - Ribosomal protein L30, ferredoxin-like fold domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604875.1 hypothetical protein SDJN03_02192, partial [Cucurbita argyrosperma subsp. sororia]1.6e-51100Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        APSSGSS
Subjt:  APSSGSS

XP_022140468.1 uncharacterized protein LOC111011134 [Momordica charantia]6.5e-4893.46Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
         PSS S+
Subjt:  APSSGSS

XP_022947175.1 uncharacterized protein LOC111451121 [Cucurbita moschata]1.6e-51100Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        APSSGSS
Subjt:  APSSGSS

XP_023512952.1 uncharacterized protein LOC111777540 [Cucurbita pepo subsp. pepo]2.2e-4893.46Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEM+KARKQKVEQH +LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        APSS S+
Subjt:  APSSGSS

XP_023533795.1 uncharacterized protein LOC111795541 [Cucurbita pepo subsp. pepo]2.4e-5098.13Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMFKARKQKVEQHKSLR PLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        APSSGSS
Subjt:  APSSGSS

TrEMBL top hitse value%identityAlignment
A0A1S3C214 50S ribosomal protein L305.4e-4890.65Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQK+E+H++LRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        APSS S+
Subjt:  APSSGSS

A0A5A7VAZ6 50S ribosomal protein L305.4e-4890.65Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKA+VPIAWSPNLYITLVRG+PGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQK+E+H++LRPPLV+NHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        APSS S+
Subjt:  APSSGSS

A0A6J1CI25 uncharacterized protein LOC1110111343.1e-4893.46Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRG+PGTRRLHRRTLEALRL KCNRTVMRWNTPTVRGMIQQVKRLVVVETEEM+KARKQKVEQHK+LRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
         PSS S+
Subjt:  APSSGSS

A0A6J1G641 uncharacterized protein LOC1114511218.0e-52100Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        APSSGSS
Subjt:  APSSGSS

A0A6J1I4X2 uncharacterized protein LOC1114699023.1e-4895.33Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGM+QQVKRLVVVETEEMFKARKQK+EQHK+LRPPLVVNHL 
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        AP SGSS
Subjt:  APSSGSS

SwissProt top hitse value%identityAlignment
A1KB09 50S ribosomal protein L301.6e-0448.08Show/hide
Query:  ITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        +TLV+ + GT++ HR T+  L LR+ N TV   +TP VRGM+ +V  LV VE
Subjt:  ITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

A4QBL5 50S ribosomal protein L301.2e-0448.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

C3PL27 50S ribosomal protein L309.2e-0542.59Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G+ GT+  HR  +E+L L++   +V++ +TP +RGM+ +V+ LV VE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8FS51 50S ribosomal protein L307.1e-0548.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT V+G  GT+  HR  L +L L++   +V+R +TP VRGM+Q V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Q8NSX3 50S ribosomal protein L307.1e-0548.15Show/hide
Query:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE
        L IT ++G  GT+  HR  L +L L++   TV+R +TP VRGMI  V+ L+VVE
Subjt:  LYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVE

Arabidopsis top hitse value%identityAlignment
AT5G55140.1 ribosomal protein L30 family protein9.7e-3465.42Show/hide
Query:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP
        M+ F+AFKA VPI WS +LYITLVRG+PGTR+LHRRTLEA+ LR+C+RTV+  N  ++RGMI QVKR+VVVETEEM+ ARK+    HK+LRPPLVV+H  
Subjt:  MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLP

Query:  APSSGSS
        +P++ SS
Subjt:  APSSGSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGCCTTCAAGGCCTTCAAAGCTAATGTTCCAATTGCATGGAGTCCTAATCTCTATATCACATTAGTGAGAGGCATTCCTGGAACAAGGAGACTTCACAGACGTAC
TTTAGAGGCCTTACGTCTTCGGAAATGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTCGAGGAATGATTCAACAGGTAAAGCGATTAGTAGTCGTTGAAACAG
AAGAAATGTTTAAAGCCCGTAAACAGAAGGTGGAACAGCACAAATCTCTTCGACCTCCATTAGTTGTAAATCACCTTCCTGCTCCAAGTTCAGGTTCTTCTTGA
mRNA sequenceShow/hide mRNA sequence
TTGCTGAATGTTATGCTTCCAAGCATCCAGTTCCACCATTTTAGAACATTGCTATTAGGGAATTTTTATTGAAAGCTTCAAGTGGTTGTAATTATAAAGATGAACGAAGT
CTTTCTATTTGAGATGAGGAATTGTCTACTTTCAATAATCAGCAATATCTTTTAATGTATTTGTTGTGCAACTGGAGCATTGGTGGAGCTATCAATCTATTGAAGATTTT
TTCTGTTTACTTGAGAGTTGGGAAGTGTAGAAGTTTTCCTGCCCAACAAATGAGAAGATTTTGTTGAAATGCTTAGGTCAGATCGTTGATGTTCTTGCAGAGAAAAATTA
TTTCTTGATCTTTATTTTAATTTGTAGATTTTGGAGGTCTTAGACATGAATGCCTTCAAGGCCTTCAAAGCTAATGTTCCAATTGCATGGAGTCCTAATCTCTATATCAC
ATTAGTGAGAGGCATTCCTGGAACAAGGAGACTTCACAGACGTACTTTAGAGGCCTTACGTCTTCGGAAATGCAACCGAACTGTCATGCGCTGGAACACACCAACTGTTC
GAGGAATGATTCAACAGGTAAAGCGATTAGTAGTCGTTGAAACAGAAGAAATGTTTAAAGCCCGTAAACAGAAGGTGGAACAGCACAAATCTCTTCGACCTCCATTAGTT
GTAAATCACCTTCCTGCTCCAAGTTCAGGTTCTTCTTGAAAACATGTGTTGCTGTTAGAGGTCAGGTTTAGTTCTTAAGTATTGGGATGATGTTGAAAAGAATTATATTT
GAGCAGCGTATTTTTCTTGAATTATTTGACAATCAAGGCTTTTATGCTCTATACATCTTGCTGAGTTTAGTGACTAGAATAACTTATTGAAATGTTTGCCTGTTTGAAAA
TGGAATGTTGCTTTTGATGATGCTACTTTCTGTAAGAAGCCTGCGAAGGAACATGGCTATTATCATCAATGAATGCACGCCCTTTTTCACTT
Protein sequenceShow/hide protein sequence
MNAFKAFKANVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLRKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMFKARKQKVEQHKSLRPPLVVNHLPAPSSGSS