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Carg13550 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13550
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionActin cytoskeleton-regulatory complex protein
Genome locationCarg_Chr02:722703..726102
RNA-Seq ExpressionCarg13550
SyntenyCarg13550
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572323.1 hypothetical protein SDJN03_29051, partial [Cucurbita argyrosperma subsp. sororia]7.7e-1552.08Show/hide
Query:  LLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPV
        LLCL+L  + L Q  A++     +  +A P       E +    PG+A  PEIRRLGKHH+  S+AGGGV++GGL TAVFA VFCYIRVTRK D V
Subjt:  LLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPV

KAG7034949.1 hypothetical protein SDJN02_01742 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-78100Show/hide
Query:  MEEVWVCRISVRNSSTNDISDHGNRWLICIASKKPDKRGVRTQLNMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVA
        MEEVWVCRISVRNSSTNDISDHGNRWLICIASKKPDKRGVRTQLNMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVA
Subjt:  MEEVWVCRISVRNSSTNDISDHGNRWLICIASKKPDKRGVRTQLNMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVA

Query:  AGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK
        AGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK
Subjt:  AGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK

KGN46704.1 hypothetical protein Csa_020980 [Cucumis sativus]2.6e-2364.71Show/hide
Query:  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSD
        AVVR  L+ L+L GM+  QLTAA+  EAP V TA+ F  +IGKE E    P VA GP IRRLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK +
Subjt:  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSD

Query:  PV
         V
Subjt:  PV

XP_022947872.1 uncharacterized protein LOC111451632 [Cucurbita moschata]9.6e-50100Show/hide
Query:  MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKS
        MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKS
Subjt:  MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKS

Query:  DPVK
        DPVK
Subjt:  DPVK

XP_023532519.1 uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo]1.3e-4695.28Show/hide
Query:  NMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTR
        NMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG EIG E+EMENQ GVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTR
Subjt:  NMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTR

Query:  KSDPVK
        K DPVK
Subjt:  KSDPVK

TrEMBL top hitse value%identityAlignment
A0A0A0K3N0 Uncharacterized protein1.0e-1252.08Show/hide
Query:  LLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPV
        L CL++  ++L Q  A +T+ A T    +    E  ++   E    VA  PEIRRLGKHH   SMAGGGV++GGL TAVFA VFCYIRVTRK D V
Subjt:  LLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPV

A0A0A0KCY0 Uncharacterized protein1.3e-2364.71Show/hide
Query:  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSD
        AVVR  L+ L+L GM+  QLTAA+  EAP V TA+ F  +IGKE E    P VA GP IRRLGKHH HTS+AGG VL+G LATAVFA+VFCYIRVTRK +
Subjt:  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSD

Query:  PV
         V
Subjt:  PV

A0A2N9IXN3 Uncharacterized protein3.0e-1243.97Show/hide
Query:  RHGLLCLVLVGMWLSQLTAASTAEA---PTVATAMPFFGEIGKEVEMENQP--------------GVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVF
        R GL CL+L  + + Q  A  +  +   P    A    G +G    + +QP               VA  P IRR+GKHH   S+AGGGV++GGLATA+F
Subjt:  RHGLLCLVLVGMWLSQLTAASTAEA---PTVATAMPFFGEIGKEVEMENQP--------------GVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVF

Query:  AVVFCYIRVTRKSDPV
        AVVFCYIRVTRK D V
Subjt:  AVVFCYIRVTRKSDPV

A0A5D3C590 Uncharacterized protein6.6e-1248.98Show/hide
Query:  LLCLVLVGMWLSQ--LTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPV
        L CL++  + L Q   + A+T + P  A   P       E        VA  PEIRRLGKHH   S+AGGGV++GGL TA+FA VFCYIRVTRK D V
Subjt:  LLCLVLVGMWLSQ--LTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPV

A0A6J1G7L7 uncharacterized protein LOC1114516324.7e-50100Show/hide
Query:  MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKS
        MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKS
Subjt:  MAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKS

Query:  DPVK
        DPVK
Subjt:  DPVK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G09280.1 unknown protein4.7e-1041Show/hide
Query:  RHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHH--LHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDP
        +H +LC +L   ++  + AAS+   P     +      G+E E    P V+   E  R G HH  +  S+AGGGV+LGGLAT    VVFCYIR TRK  P
Subjt:  RHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGKHH--LHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAGGTGTGGGTCTGCAGAATTAGTGTAAGAAATTCATCTACGAACGATATCTCGGATCATGGCAACCGTTGGCTGATATGCATTGCATCCAAGAAGCCAGACAA
GCGTGGGGTTCGTACTCAACTAAATATGGCTGTGGTTCGACATGGTTTGCTGTGTCTGGTTCTTGTCGGGATGTGGTTGAGTCAGCTCACGGCTGCGAGCACCGCCGAGG
CACCAACAGTTGCCACTGCGATGCCGTTTTTTGGGGAAATTGGAAAGGAAGTGGAGATGGAGAATCAGCCGGGCGTGGCTGCAGGTCCTGAAATCAGAAGGCTGGGAAAG
CATCATCTTCACACGTCCATGGCCGGCGGCGGGGTGCTGCTCGGCGGCCTGGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTTACTAGAAAATCAGACCC
TGTCAAATAA
mRNA sequenceShow/hide mRNA sequence
AATATAATTTGTTTAATTAAAATCGAGGTGTGGTGATTTGGGGCCTAGGGTTCTTCCCCGTTCGTCCGCTTTGTTGTCGTCAACGCGATCGTCTTGGTCCATGGGCTCTC
TAGAATCGGAATGTCCGTTCTTTGTTCGACGTCGCGAATTTAGGGACTTCTCTTCCCCGCAGAAATGGAGGAGGTGTGGGTCTGCAGAATTAGTGTAAGAAATTCATCTA
CGAACGATATCTCGGATCATGGCAACCGTTGGCTGATATGCATTGCATCCAAGAAGCCAGACAAGCGTGGGGTTCGTACTCAACTAAATATGGCTGTGGTTCGACATGGT
TTGCTGTGTCTGGTTCTTGTCGGGATGTGGTTGAGTCAGCTCACGGCTGCGAGCACCGCCGAGGCACCAACAGTTGCCACTGCGATGCCGTTTTTTGGGGAAATTGGAAA
GGAAGTGGAGATGGAGAATCAGCCGGGCGTGGCTGCAGGTCCTGAAATCAGAAGGCTGGGAAAGCATCATCTTCACACGTCCATGGCCGGCGGCGGGGTGCTGCTCGGCG
GCCTGGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTTACTAGAAAATCAGACCCTGTCAAATAATTAGCCTTTTCTTCTTTTTTCTGCTCTTTTTTCTCC
TACTTCTGTGGTATTGATTCGTAGTTGTAAAATCGTAGATAATTAATTACTTTGGTCAATGTGGCATAGACTGTGTTTTTGGTGTTAGGTCTGCTAGACCCTTAATTAAT
AAGGAATGTTTATTTCCTTTTTTTCAACCGACGTTGGATTTCATAATCCACTCTCCTTTGGAGGCCCAACGTCTTTGTTGACACATCATTCGATGTTTAGCTTTGATACC
ATTTGTAACAGCTCAAACTTACTAATACCAGATATTGTTCGCCTTTGATTA
Protein sequenceShow/hide protein sequence
MEEVWVCRISVRNSSTNDISDHGNRWLICIASKKPDKRGVRTQLNMAVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGEIGKEVEMENQPGVAAGPEIRRLGK
HHLHTSMAGGGVLLGGLATAVFAVVFCYIRVTRKSDPVK