; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg13635 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13635
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase III subunit rpc6
Genome locationCarg_Chr02:286773..288530
RNA-Seq ExpressionCarg13635
SyntenyCarg13635
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR007832 - RNA polymerase Rpc34
IPR016049 - RNA polymerase Rpc34-like
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6604735.1 DNA-directed RNA polymerase III subunit rpc6, partial [Cucurbita argyrosperma subsp. sororia]6.3e-136100Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
        GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP

Query:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
Subjt:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

XP_022149571.1 DNA-directed RNA polymerase III subunit rpc6 isoform X1 [Momordica charantia]5.8e-12189.58Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRP+ +   GGALIEHEKVLYDLICSKQSMGIWIGD+KRETKY D++VTKSLKALQ +G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAK-GVKGE
        GNWYS+GKLDREYI+TLKGFC RMIQKMKVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGE
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAK-GVKGE

Query:  PKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        PKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  PKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

XP_022946967.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita moschata]6.3e-136100Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
        GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP

Query:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
Subjt:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

XP_022970903.1 DNA-directed RNA polymerase III subunit rpc6 [Cucurbita maxima]7.0e-13599.16Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQ RGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
        GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP

Query:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
Subjt:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

XP_038900531.1 LOW QUALITY PROTEIN: DNA-directed RNA polymerase III subunit RPC6-like [Benincasa hispida]2.1e-11084.03Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MS+ QGPSSLKRKR + AHG GGALIEHEKVL+DLICSKQ+MGIWIGD+++ETKY D VV K LK+LQ RGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
        GNWYSDGKLD+EYI+TLKGFCARMIQK+KV+TIEG V SFKKSG SKVDLSREQIEEIVNALVLDNEVMEVK TG+ EFDFIPV KICYK YAK VKGEP
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP

Query:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTK-WL
        KTGAMAS PCGVCPRI+HCT +GIIS RTC+YYTK W+
Subjt:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTK-WL

TrEMBL top hitse value%identityAlignment
A0A1S3BL06 DNA-directed RNA polymerase III subunit rpc6-like2.5e-10176.13Show/hide
Query:  MSRSQGPSSLKRKRPE--PAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKEL
        MS+SQGPSSLKRKRP+    +  GGALI  EKVLYDLICSKQSMGI   DMKRETK+ ++VVTKSLK+LQ +GLIK+V+HYQNKGKKFYLS DFEP+KEL
Subjt:  MSRSQGPSSLKRKRPE--PAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKEL

Query:  TGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYK--SYAKGV
        TGGNWY DG+LD++YI+TLK  CARMIQ+ K+ TIEGIV+SFK+SGA KV+LSREQIEEIVNALVLDN+VMEVKS+G GEF+FIP+GKICYK  +   G+
Subjt:  TGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYK--SYAKGV

Query:  KGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        KGEPK GAMAS PCGVCPRI +CTPNGIISP TCVYYTKWL+F
Subjt:  KGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

A0A6J1D758 DNA-directed RNA polymerase III subunit rpc6 isoform X24.9e-10290.45Show/hide
Query:  MGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFK
        MGIWIGD+KRETKY D++VTKSLKALQ +G+IKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYS+GKLDREYI+TLKGFC RMIQKMKVATIEGIVDSFK
Subjt:  MGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFK

Query:  KSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        KSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGEPKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  KSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAK-GVKGEPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

A0A6J1D8D1 DNA-directed RNA polymerase III subunit rpc6 isoform X12.8e-12189.58Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRP+ +   GGALIEHEKVLYDLICSKQSMGIWIGD+KRETKY D++VTKSLKALQ +G+IKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAK-GVKGE
        GNWYS+GKLDREYI+TLKGFC RMIQKMKVATIEGIVDSFKKSGASKVDLSREQI+EIVNALVLDNEVMEVKSTG+GEFDFIP+GKICYK YAK GVKGE
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAK-GVKGE

Query:  PKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        PKTGAMAS PCGVCPRI+HCTPNG+ISPRTCVYYTKWL+F
Subjt:  PKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

A0A6J1G553 DNA-directed RNA polymerase III subunit rpc63.1e-136100Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
        GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP

Query:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
Subjt:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

A0A6J1I599 DNA-directed RNA polymerase III subunit rpc63.4e-13599.16Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQ RGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
        GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVD+FKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEP

Query:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
        KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
Subjt:  KTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLEF

SwissProt top hitse value%identityAlignment
Q2T9S3 DNA-directed RNA polymerase III subunit RPC62.5e-2631.88Show/hide
Query:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKM
        EK++Y +I    + GIW  D++ ++  P   + K LK L+ + LIK V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKM

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPC
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y++ +  +   P TG +   PC
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPC

Query:  GVCPRINHCTPNGIISPRTCVYYTKWLEF
        G+CP  + C   G ISP  C+Y T+WLEF
Subjt:  GVCPRINHCTPNGIISPRTCVYYTKWLEF

Q86JM3 DNA-directed RNA polymerase III subunit rpc65.0e-2730.42Show/hide
Query:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG
        +  S   +S K   PE      G  +E + ++Y LI +  + G W  ++K  + Y    +TK LK L+ R LIK V+  Q+  KK Y+  + EPS+E+TG
Subjt:  MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTG

Query:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKK--SGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKG
        G  YSD   D +YI  +K      +       +  I+   +K    A+   L  E I+ +VN ++ D ++ E++ T  G      +G+     Y K  K 
Subjt:  GNWYSDGKLDREYISTLKGFCARMIQKMKVATIEGIVDSFKK--SGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKG

Query:  EPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLE
                + PCG CP  + C+ NG++SP+ CVY+ ++LE
Subjt:  EPKTGAMASTPCGVCPRINHCTPNGIISPRTCVYYTKWLE

Q921X6 DNA-directed RNA polymerase III subunit RPC61.2e-2531.88Show/hide
Query:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKM
        EK++Y +I    + GIW  D++ ++  P   + K LK L+ + LIK V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKM

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPC
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y++    +   P TG + + PC
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPC

Query:  GVCPRINHCTPNGIISPRTCVYYTKWLEF
        G+CP    C   G ISP  C+Y T+WLEF
Subjt:  GVCPRINHCTPNGIISPRTCVYYTKWLEF

Q9H1D9 DNA-directed RNA polymerase III subunit RPC65.6e-2631.88Show/hide
Query:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKM
        EK++Y +I    + GIW  D++ ++  P   + K LK L+ + LIK V+      KK Y+  + +P + +TGG WYSD   + E++  L   C + +Q  
Subjt:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQKM

Query:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPC
             E   +       SF  S          G SKV+LS E IE I+N L+ D +V M + +   G    +      Y++    +   P TG +   PC
Subjt:  KVATIEGIVD-------SFKKS----------GASKVDLSREQIEEIVNALVLDNEV-MEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPC

Query:  GVCPRINHCTPNGIISPRTCVYYTKWLEF
        G+CP  + C   G ISP  C+Y T+WLEF
Subjt:  GVCPRINHCTPNGIISPRTCVYYTKWLEF

Q9VD25 Probable DNA-directed RNA polymerase III subunit RPC69.2e-2127.75Show/hide
Query:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQ--
        EKV+Y ++    + GIWI D++ ++      + K LK L+ + LIK V+      KK Y+  + EP   +TGG WY D   + E++  L   C R +Q  
Subjt:  EKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDREYISTLKGFCARMIQ--

Query:  ---------------KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPCG
                       +M   T+  +       G SKV+L+   +E I+  +V D     V+            G   Y++    +   P TG +   PCG
Subjt:  ---------------KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPCG

Query:  VCPRINHCTPNGIISPRTCVYYTKWLE
        +CP I +C+  G ++  TC Y   WL+
Subjt:  VCPRINHCTPNGIISPRTCVYYTKWLE

Arabidopsis top hitse value%identityAlignment
AT5G23710.1 DNA binding;DNA-directed RNA polymerases6.1e-5245.26Show/hide
Query:  KRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD
        KRKRP+P    G     HEK L DLI   Q  G  + ++KRE   P  +VT+ + +L+ + LIK V +  NKG K YL+ +FEP  ELTGG WY+DG LD
Subjt:  KRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD

Query:  REYISTLKGFCARMIQ--KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGV-KGEPKTGAMAS
           I  LK  C  +++  + +V T+E +   F K    +  LS +Q +EI+  L+LDN +MEVKS G  EF    +G++CY+   K    GEP+ GA AS
Subjt:  REYISTLKGFCARMIQ--KMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGV-KGEPKTGAMAS

Query:  TPCGVCPRINHCTPNGIISPRTCVYYTKWLEF
         PCGVCP I  C+P+G+ISP TCVY+ KWL+F
Subjt:  TPCGVCPRINHCTPNGIISPRTCVYYTKWLEF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCTCATGGCCATGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTGTATGACCTGATTTG
CAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTATCCTGACAATGTGGTAACTAAATCACTCAAGGCCCTTCAAGGCAGAGGCCTGATTA
AACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGAC
AGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATGAAGGTGGCTACAATTGAAGGGATCGTGGACTCATTCAAGAAGAGCGGAGCGTCCAA
AGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTGATGGAGGTGAAGAGCACTGGCGCAGGGGAGTTTGATTTTATTCCTG
TTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAACAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACC
CCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAATTTTAG
mRNA sequenceShow/hide mRNA sequence
TTAGGCTTCACTCCATCGCCCTTGTACGTTTTAGAGAAACTGAACGCCCCCTCGGGATCGATTTGCCGATCAAAACTAATATCGCCGCCGCTCGTCATCCCACCTCTCCC
CGCATCGTCTTCTCTCCGTCGCCTCTCGGGTTGGTTGTCTCTAGATTGCTTAAACCCTAGCTCTTTAGGGCGCTTCTCCATCGCTTTTGCGTTGCCACTGTTTCTGCAAT
TATCGTCTCTAAAATCTTGTAGTTCTGATATTTGATTTGAAGTCGCAGACTTTCAGATGAGCAGATCACAAGGGCCTTCATCACTCAAAAGAAAAAGGCCAGAACCAGCT
CATGGCCATGGAGGAGCTCTCATTGAGCATGAAAAAGTGCTGTATGACCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGGGACATGAAAAGAGAAACAAAGTA
TCCTGACAATGTGGTAACTAAATCACTCAAGGCCCTTCAAGGCAGAGGCCTGATTAAACTAGTTGAACACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATT
TCGAACCATCGAAAGAACTGACCGGCGGTAATTGGTACAGCGATGGAAAGCTCGACAGAGAATACATCAGTACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGATG
AAGGTGGCTACAATTGAAGGGATCGTGGACTCATTCAAGAAGAGCGGAGCGTCCAAAGTGGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGA
CAATGAAGTGATGGAGGTGAAGAGCACTGGCGCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGAGCTATGCTAAAGGAGTTAAAGGGGAGCCCAAAA
CAGGGGCTATGGCTTCTACTCCTTGTGGAGTCTGTCCAAGGATTAATCATTGCACCCCAAATGGCATCATTTCGCCTAGGACTTGTGTGTATTACACCAAGTGGTTAGAA
TTTTAGGTTTGAAGCTTTCTGAGGTTGGTTTTAAGAGAACGAGTGGCCGCGAATTTCCCCTCTAACCATACGAACTATGCTCGACTTGGCAATTCTAGAAAAGTTTTAGC
TGTCTATTCTTTATTGTGTTCATAATCT
Protein sequenceShow/hide protein sequence
MSRSQGPSSLKRKRPEPAHGHGGALIEHEKVLYDLICSKQSMGIWIGDMKRETKYPDNVVTKSLKALQGRGLIKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLD
REYISTLKGFCARMIQKMKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGAGEFDFIPVGKICYKSYAKGVKGEPKTGAMASTPCGVCPRINHCT
PNGIISPRTCVYYTKWLEF