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Carg13678 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13678
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L4
Genome locationCarg_Chr03:5157259..5158714
RNA-Seq ExpressionCarg13678
SyntenyCarg13678
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR002136 - Ribosomal protein L4/L1e
IPR013005 - 50S ribosomal protein uL4
IPR023574 - Ribosomal protein L4 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7033966.1 rplD, partial [Cucurbita argyrosperma subsp. argyrosperma]5.7e-58100Show/hide
Query:  MHVLTHDIFFPYVYETSLRKFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSR
        MHVLTHDIFFPYVYETSLRKFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSR
Subjt:  MHVLTHDIFFPYVYETSLRKFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSR

Query:  DAVERIVTRMHTPINR
        DAVERIVTRMHTPINR
Subjt:  DAVERIVTRMHTPINR

XP_004134779.1 uncharacterized protein LOC101223158 [Cucumis sativus]3.5e-3987.63Show/hide
Query:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        +  + +LL+FDNLDV THKTK MV YV++MENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Subjt:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

XP_022950857.1 uncharacterized protein LOC111453831 [Cucurbita moschata]2.0e-4296.81Show/hide
Query:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        + +LLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Subjt:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

XP_022978853.1 uncharacterized protein LOC111478684 [Cucurbita maxima]1.3e-4194.68Show/hide
Query:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        + +LLIFDNLDVATHKTKY+VNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVE+IVTRMHTPINR
Subjt:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

XP_023545190.1 uncharacterized protein LOC111804568 [Cucurbita pepo subsp. pepo]2.0e-4296.81Show/hide
Query:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        + +LLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Subjt:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

TrEMBL top hitse value%identityAlignment
A0A0A0KH99 Uncharacterized protein1.7e-3987.63Show/hide
Query:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        +  + +LL+FDNLDV THKTK MV YV++MENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Subjt:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

A0A1S3B0T2 50S ribosomal protein L48.4e-3986.6Show/hide
Query:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        +  + +LL+FDNLDV THKTK +V YVN MENTKKVLLVDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Subjt:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

A0A5D3CMH6 50S ribosomal protein L48.4e-3986.6Show/hide
Query:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        +  + +LL+FDNLDV THKTK +V YVN MENTKKVLLVDGGPI+EKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Subjt:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

A0A6J1GH25 uncharacterized protein LOC1114538319.6e-4396.81Show/hide
Query:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        + +LLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
Subjt:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

A0A6J1IUG2 uncharacterized protein LOC1114786846.2e-4294.68Show/hide
Query:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        + +LLIFDNLDVATHKTKY+VNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVE+IVTRMHTPINR
Subjt:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR

SwissProt top hitse value%identityAlignment
A5V601 50S ribosomal protein L43.4e-1339.33Show/hide
Query:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
        D +L++ D L++   KTK ++  + ++      L++DG  +D   +LA+ N+H +NVLP+IG NVY IL H+TLV++R AVE++  R +
Subjt:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH

A8GVB5 50S ribosomal protein L45.5e-1136.26Show/hide
Query:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM
        KF + +LL+ D+L + T KT  +VN +N+ +  K   ++DG  +D    LA QN++   V+P IG NVY I+ H+ +++S++AV  +  R+
Subjt:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM

Q1RHM2 50S ribosomal protein L45.5e-1136.26Show/hide
Query:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM
        KF + +LL+ D+L + T KT  +VN +N+ +  K   ++DG  +D    LA QN++   V+P IG NVY I+ H+ +++S++AV  +  R+
Subjt:  KFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM

Q2G8X9 50S ribosomal protein L42.9e-1246.51Show/hide
Query:  LLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
        L++ DNLDV   KTK +V  + +    KKVL++DG  +++    A +N+  VNVLP+IG NVY IL HDTLV++R AVE++  R +
Subjt:  LLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH

Q2N9B2 50S ribosomal protein L43.8e-1243.02Show/hide
Query:  LLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH
        L++ D+LD+   KTK +  + ++     KVL++DG  ++E    A  NL  VNVLP++G NVY IL HDTLV+++DAVE++  R +
Subjt:  LLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMH

Arabidopsis top hitse value%identityAlignment
AT2G20060.1 Ribosomal protein L4/L1 family1.8e-3878.72Show/hide
Query:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR
        + +LL+FD+L + THKTK +VNY N+MENTKKVL+V+GGPIDEKLKLATQNLHYVN++PSIGLNVYSILLHDTL+MSRDAV +IV RMHTPINR
Subjt:  DSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRMHTPINR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGTTCTAACACACGATATTTTCTTTCCATATGTTTATGAAACCTCACTTCGGAAATTTTGTGACTCGCAGCTTCTGATATTTGATAATCTGGACGTCGCTACACA
TAAGACGAAGTATATGGTGAACTATGTCAATGAAATGGAGAATACTAAAAAAGTTCTTCTCGTTGATGGTGGCCCCATCGATGAGAAACTGAAGTTGGCCACACAAAACC
TTCATTACGTCAATGTTTTGCCTTCTATAGGTTTGAATGTGTACAGCATTCTTCTACATGATACTCTTGTCATGTCTCGTGATGCTGTAGAAAGAATTGTTACCCGGATG
CACACTCCAATCAACCGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCATGTTCTAACACACGATATTTTCTTTCCATATGTTTATGAAACCTCACTTCGGAAATTTTGTGACTCGCAGCTTCTGATATTTGATAATCTGGACGTCGCTACACA
TAAGACGAAGTATATGGTGAACTATGTCAATGAAATGGAGAATACTAAAAAAGTTCTTCTCGTTGATGGTGGCCCCATCGATGAGAAACTGAAGTTGGCCACACAAAACC
TTCATTACGTCAATGTTTTGCCTTCTATAGGTTTGAATGTGTACAGCATTCTTCTACATGATACTCTTGTCATGTCTCGTGATGCTGTAGAAAGAATTGTTACCCGGATG
CACACTCCAATCAACCGCTGAAGCGGCAGTGCATTTGACCTGAATTATATGCTCAGCTCAGATCAGCAGTAACCTTTATTGATAATTCCCCCCTCTGCACGAAGGGGTGA
AAACCTGTATGGTGTTTCCGTTGAGTTTGAAACTTCACTTCTGCTGATTTGATTAGCACTTGAAGGCATTGGATAGTTAGTTTTGAAGCTGTAGTTTGTGGTACTCCAAA
ATAACAAAAAGAGCCATTCTTACTGGCAGATTTTTCTGGGACTAAGGTTATCACATCTTGCAGATCTTTTTTTCCTCTTTAGAAAATCATGTTACTGATTTCTTTTATAT
AACAGTTATTCTGAGACTAAGGTTATCGCTTGTCGGTGTCGATGGACTTGTCTCCATCACCTATTCCCTTGTTGGTCTCGTGTTGGATTCACTAACCATCTGAAAACAAT
GAAGTCTTAGTAGGTAGCAGCAAGCAACTGACCATGATGCTGTTAGGAAAATGGCTGAGAAATAGACAAGTTTTCTTACTTGAACTTTGAATCAAATGATTTGCCTACCA
CTTACGACTGTTTTTCACAGTGGGATGCAGCTCATTAGAACAAGATCTTCATTCCCATGCTGATAAGCTTTGGCCAAAGGAAACCAGGGAAAGCCTCTGAATCAAGATCA
TGCATTTCTGCATCAAATTGGCTAGGAATTTGTCCCCGTTTCAGTTGTCACTAATTTAGTTTTAAATTTGTTCATGTAGGATGTTTTTTCATGTTCTTAAATTTGACAAC
ATTTTCAATAAAAAAAATT
Protein sequenceShow/hide protein sequence
MHVLTHDIFFPYVYETSLRKFCDSQLLIFDNLDVATHKTKYMVNYVNEMENTKKVLLVDGGPIDEKLKLATQNLHYVNVLPSIGLNVYSILLHDTLVMSRDAVERIVTRM
HTPINR