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Carg13724 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13724
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionC2H2-type domain-containing protein
Genome locationCarg_Chr03:4984175..4984467
RNA-Seq ExpressionCarg13724
SyntenyCarg13724
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603750.1 hypothetical protein SDJN03_04359, partial [Cucurbita argyrosperma subsp. sororia]2.2e-4497.83Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSK+EELFVFNPEA+LPCFVVTYRQ
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

KAG7033920.1 hypothetical protein SDJN02_03646, partial [Cucurbita argyrosperma subsp. argyrosperma]9.0e-46100Show/hide
Query:  MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
Subjt:  MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

XP_022950196.1 uncharacterized protein LOC111453361 [Cucurbita moschata]4.2e-4396.74Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMV GGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEA+LPCFVVTYR+
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

XP_022977364.1 uncharacterized protein LOC111477713 [Cucurbita maxima]1.9e-4092.39Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        GVFTC+TSGRAFECIEMN EEDMGGLRRALMVCRVIAG VCGGC EEDE+NANSGSGFESSSGKTGQNSKQEELFVFNPEA+LPCFVVTYR+
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

XP_023544489.1 uncharacterized protein LOC111804050 [Cucurbita pepo subsp. pepo]2.3e-4194.57Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        GV TCATSGRAFECIEMN EEDMGGLRRALMVCRVIAGMVCGGCMEEDELN NSGSGF+SSSGKTGQNSKQEELFVFNPEA+LPCFVVTYRQ
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

TrEMBL top hitse value%identityAlignment
A0A1S3B0L1 uncharacterized protein LOC1034845791.9e-1757.61Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        G FTCATSG+AFE I MNE+     LR+ALMVCRVIAG +     EEDE + N  SG + S GKTG++SK+EEL+VF+ +A+LPCFV+T+++
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

A0A5A7UG85 Zinc finger, C2H21.9e-1757.61Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        G FTCATSG+AFE I MNE+     LR+ALMVCRVIAG +     EEDE + N  SG + S GKTG++SK+EEL+VF+ +A+LPCFV+T+++
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

A0A6J1CLY2 uncharacterized protein LOC1110124953.7e-2161.96Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        G   CATSGRA E I +NEEE+  GLRRALMVCRVIAG + GG +E+DE  AN  SG +SS G+TG++   EE  VFNP A+LPCFVVTY++
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

A0A6J1GE56 uncharacterized protein LOC1114533612.0e-4396.74Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMV GGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEA+LPCFVVTYR+
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

A0A6J1IR62 uncharacterized protein LOC1114777139.4e-4192.39Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ
        GVFTC+TSGRAFECIEMN EEDMGGLRRALMVCRVIAG VCGGC EEDE+NANSGSGFESSSGKTGQNSKQEELFVFNPEA+LPCFVVTYR+
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G11490.1 zinc finger (C2H2 type) family protein1.3e-1043.96Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYR
        GV T +TS  A E IE ++  + G L  A+++CRVIAG V    M+  E N+   S F+S + K GQNS+ EEL++ + +ALLPCFV+ ++
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYR

AT1G75710.1 C2H2-like zinc finger protein3.2e-0936.11Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNA-----------------NSGSGFESSSGKTGQNSKQEELFVFNPEALL
        GV T A+SGRA + +  +++      RR ++VCRVIAG V    +   + +A                 +SG  F+S +   G  S  EEL V+NP A+L
Subjt:  GVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNA-----------------NSGSGFESSSGKTGQNSKQEELFVFNPEALL

Query:  PCFVVTYR
        PCFVV Y+
Subjt:  PCFVVTYR

AT2G29660.1 zinc finger (C2H2 type) family protein1.3e-1337.76Show/hide
Query:  GVFTCATSGRAFECIEMNEEEDMG--GLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNS------KQEELFVFNPEALLPCFVVTY
        G+ T AT  R    +    EE+ G   ++RA++VCRV+AG V    +++D+++ + G G++S  G++G  S        +EL VFNP A+LPCFV+ Y
Subjt:  GVFTCATSGRAFECIEMNEEEDMG--GLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNS------KQEELFVFNPEALLPCFVVTY

AT4G27240.1 zinc finger (C2H2 type) family protein4.8e-1348.31Show/hide
Query:  MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVV
        +GVFT +TS RAFE I +   +  GG R+AL+VCRVIAG V       +E+     SGF+S +GK G  +  EEL++ N  ALLPCFV+
Subjt:  MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVV

AT5G54630.1 zinc finger protein-related4.6e-1649.46Show/hide
Query:  MGVFTCATSGRAFECIEMNEEEDMGG----LRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVV
        +GVFT +TSGRAFE I +N  ++ G     +R+ L+VCRVIAG V       +E+N    SGF+S +GK G  +  EEL++ NP+ALLPCFVV
Subjt:  MGVFTCATSGRAFECIEMNEEEDMGG----LRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGTATTTACATGCGCAACAAGTGGAAGAGCCTTCGAATGTATTGAGATGAATGAAGAAGAAGATATGGGCGGCTTAAGAAGAGCCTTAATGGTGTGCAGAGTGAT
TGCAGGGATGGTCTGTGGCGGATGCATGGAGGAAGATGAACTGAACGCCAATTCCGGTTCTGGGTTCGAATCGTCGAGTGGGAAAACGGGACAGAATTCAAAACAGGAAG
AACTGTTCGTGTTCAATCCTGAAGCTCTACTTCCTTGCTTCGTGGTAACTTACAGACAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGCGTATTTACATGCGCAACAAGTGGAAGAGCCTTCGAATGTATTGAGATGAATGAAGAAGAAGATATGGGCGGCTTAAGAAGAGCCTTAATGGTGTGCAGAGTGAT
TGCAGGGATGGTCTGTGGCGGATGCATGGAGGAAGATGAACTGAACGCCAATTCCGGTTCTGGGTTCGAATCGTCGAGTGGGAAAACGGGACAGAATTCAAAACAGGAAG
AACTGTTCGTGTTCAATCCTGAAGCTCTACTTCCTTGCTTCGTGGTAACTTACAGACAGTGA
Protein sequenceShow/hide protein sequence
MGVFTCATSGRAFECIEMNEEEDMGGLRRALMVCRVIAGMVCGGCMEEDELNANSGSGFESSSGKTGQNSKQEELFVFNPEALLPCFVVTYRQ