CuGenDBv2

Gene ID	Carg13778
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase
Genome location	Carg_Chr03:4725664..4727507
RNA-Seq Expression	Carg13778
Synteny	Carg13778
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily IPR035979 - RNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6603690.1 hypothetical protein SDJN03_04299, partial [Cucurbita argyrosperma subsp. sororia]

1.9e-89

100

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Query:  LVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAA
        LVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAA
Subjt:  LVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRNAA

Query:  LDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        LDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  LDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

KAG7033867.1 hypothetical protein SDJN02_03592, partial [Cucurbita argyrosperma subsp. argyrosperma]

9.6e-97

100

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Query:  MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGK
        MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGK
Subjt:  MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGK

Query:  TILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        TILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  TILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

XP_022949855.1 uncharacterized protein LOC111453126 [Cucurbita moschata]

9.6e-89

98.21

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Query:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN
        +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPS KAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGK ILLQGIPRN
Subjt:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN

Query:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

XP_022977775.1 uncharacterized protein LOC111477976 [Cucurbita maxima]

3.3e-89

94.35

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Query:  NEFFVTL-LSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKT
        N F  TL  +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRK+YDNAFRVIGRRGR+YRLERADRSQWDLLSPYNGKT
Subjt:  NEFFVTL-LSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKT

Query:  ILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        +LLQGIPRNAALDDVERFLSGCDYDAT INMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  ILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

XP_023544682.1 uncharacterized protein LOC111804194 [Cucurbita pepo subsp. pepo]

3.0e-90

98.81

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Query:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN
        +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKT+LLQGIPRN
Subjt:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN

Query:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CQY2 uncharacterized protein LOC111013764

7.0e-85

87.5

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Query:  NEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTI
        + F  T  +GLVYGKLYGITRN LKTDIVNLLEGCNL LDDVKV+YNRSFTPTSMMMQFPSR+AYDNA RVIGR+GR+YRLERADRSQWDLLSPYNGKT+
Subjt:  NEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTI

Query:  LLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        LLQG+PRNA  +DVERFLSGC+YDATSINMFFRAS+PEP+RMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  LLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

A0A6J1GDZ1 uncharacterized protein LOC111453126

4.7e-89

98.21

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Query:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN
        +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPS KAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGK ILLQGIPRN
Subjt:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN

Query:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

A0A6J1HGY5 uncharacterized protein LOC111463377

1.7e-83

89.88

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Query:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN
        +GLVYGKL GITRN LKTDIVNLLEGCNL+LDDVKVEYNRSFTPTSMMMQFPSR+AYDNAFRVIGR+GR+YRLERADRSQWD+LSPY+GKT+LLQGIPRN
Subjt:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN

Query:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        A ++DVERFL GCDYDATSINMFFRAS PEP+R+ATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

A0A6J1I6U3 uncharacterized protein LOC111471264

1.8e-85

91.67

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Query:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN
        +GLVYGKLYGITRN LKTDIVNLLEGCNL+LDDVKVEYNRSFTPTSMMMQFPSR+AYDNAFRVIGR+GR+YRLERADRSQWD+LSPYNGKT+LLQGIPRN
Subjt:  SGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN

Query:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        A ++DVERFL GCDYDATSINMFFRAS PEP+RMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

A0A6J1INA4 uncharacterized protein LOC111477976

1.6e-89

94.35

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Query:  NEFFVTL-LSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKT
        N F  TL  +GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRK+YDNAFRVIGRRGR+YRLERADRSQWDLLSPYNGKT
Subjt:  NEFFVTL-LSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKT

Query:  ILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        +LLQGIPRNAALDDVERFLSGCDYDAT INMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
Subjt:  ILLQGIPRNAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G02740.1 Ribosomal protein S24e family protein

1.7e-43

50.3

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Query:  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNR--SFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPR
        G  YGK  G +++ LKTDI+N+LEGC+L+ DD+K  Y R  + TP ++ +QFPS  AYD A R I ++G++YRLE+A R+QWD + PY GK + L GIP 
Subjt:  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNR--SFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPR

Query:  NAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ
        NA  DD++RFLSGC Y   SI       +    R+A V F S TQAM+A++TKNR F LN +I ++VLQ
Subjt:  NAALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

AT5G02740.2 Ribosomal protein S24e family protein

1.0e-32

52.89

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Query:  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNR--SFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPR
        G  YGK  G +++ LKTDI+N+LEGC+L+ DD+K  Y R  + TP ++ +QFPS  AYD A R I ++G++YRLE+A R+QWD + PY GK + L GIP 
Subjt:  GLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNR--SFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPR

Query:  NAALDDVERFLSGCDYDATSI
        NA  DD++RFLSGC Y   SI
Subjt:  NAALDDVERFLSGCDYDATSI

Sequences

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CDS sequence

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ATGCCTAATGAGTTTTTTGTTACACTCTTATCAGGTTTGGTGTATGGAAAATTGTATGGTATCACAAGGAATGTTCTAAAGACAGACATTGTCAATTTGCTTGAAGGATG
TAATTTGAGTTTGGATGATGTCAAAGTTGAATACAACCGGAGTTTCACGCCAACCTCTATGATGATGCAATTCCCCTCCCGGAAGGCCTATGATAATGCTTTTCGAGTGA
TTGGAAGAAGAGGTCGCATGTACAGATTGGAGCGGGCTGATCGTTCTCAGTGGGACCTTCTTTCACCTTACAATGGAAAAACTATCCTTCTGCAAGGAATACCTCGAAAT
GCAGCGCTAGATGACGTGGAGCGCTTCTTATCTGGCTGTGACTATGATGCAACCTCAATCAATATGTTTTTCAGGGCATCCATTCCAGAGCCCATCAGAATGGCAACAGT
GCTGTTCCCTTCACCAACACAAGCAATGCATGCATTTCTTACTAAGAACAGAGGCTTTTGTCTGAACAACCAAATTTTGATGCGGGTTCTCCAATAA

mRNA sequence

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Protein sequence

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MPNEFFVTLLSGLVYGKLYGITRNVLKTDIVNLLEGCNLSLDDVKVEYNRSFTPTSMMMQFPSRKAYDNAFRVIGRRGRMYRLERADRSQWDLLSPYNGKTILLQGIPRN
AALDDVERFLSGCDYDATSINMFFRASIPEPIRMATVLFPSPTQAMHAFLTKNRGFCLNNQILMRVLQ

Carg13778 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome