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Carg13816 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13816
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like
Genome locationCarg_Chr03:4509516..4510949
RNA-Seq ExpressionCarg13816
SyntenyCarg13816
Gene Ontology termsGO:0009639 - response to red or far red light (biological process)
GO:0005622 - intracellular (cellular component)
InterPro domainsIPR037766 - Protein FAR-RED ELONGATED HYPOCOTYL 1


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6603645.1 Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE protein, partial [Cucurbita argyrosperma subsp. sororia]7.7e-10899.48Show/hide
Query:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
        MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDS KFNKKRPKEEGESSLTKMATEGKDMSTEEVR
Subjt:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR

Query:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
        IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
Subjt:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP

KAG7033829.1 hypothetical protein SDJN02_03554, partial [Cucurbita argyrosperma subsp. argyrosperma]2.7e-108100Show/hide
Query:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
        MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
Subjt:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR

Query:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
        IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
Subjt:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP

XP_022950730.1 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like [Cucurbita moschata]4.9e-10296.39Show/hide
Query:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
        MDQKNH RHHPSHGGTHSFS FQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDS KFNKKRPK EGESSLTKMATEGKDMSTEEVR
Subjt:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR

Query:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
        IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYE  CSDSTQNLLLPTDS HDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
Subjt:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP

XP_022978296.1 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like [Cucurbita maxima]3.3e-9892.82Show/hide
Query:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
        MDQKNH RHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDS KFNKKRPKEEGESSLTKMA      STEEVR
Subjt:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR

Query:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHD-FVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
        IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDS HD FVLSSGRWSIDPEAESKI++P IDQEFEQYFSG+LPSLDP
Subjt:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHD-FVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP

XP_023544624.1 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like [Cucurbita pepo subsp. pepo]6.8e-10496.91Show/hide
Query:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
        MDQKNH+RHHPSHGGTHSF GFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDS KFNKKRPKEEGESSLTKMATEGKDMSTEEVR
Subjt:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR

Query:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
        IQGEKDGIKD LDLNYGHEEDLLEFG+HGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILP LDP
Subjt:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP

TrEMBL top hitse value%identityAlignment
A0A0A0KZL8 Uncharacterized protein1.0e-5256.95Show/hide
Query:  MDQKNHTRHHPSHGGT---------------HSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFN---KKRPKEEG--
        MDQ N+  HHPSH  T                   G Q W+TE+ DVK KR+LL +QLSLPT KLP WGP   SIS P+GED+ KFN   ++  +EEG  
Subjt:  MDQKNHTRHHPSHGGT---------------HSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFN---KKRPKEEG--

Query:  --------ESSLTKMATE-GKDMSTEEVRIQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESK
                ES+LTK+A +  K+MS E+VR+QG     KDKL  +YGHEEDLLEFGS     IYE+CCS S QNLLLPTDSK +FVLSSGRWS+D E ESK
Subjt:  --------ESSLTKMATE-GKDMSTEEVRIQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESK

Query:  IITPTIDQEFEQYFSGILPSLDP
         I PTIDQEFEQYFS +LPSLDP
Subjt:  IITPTIDQEFEQYFSGILPSLDP

A0A1S3BJU4 uncharacterized protein LOC1034903811.3e-6062.68Show/hide
Query:  MDQKNHTRHHPSHGGT---------------HSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLT
        MDQ N+  HHPS   T                 F GFQ W+TE+ DVKKKR+LL +QLSLPT KLPCWG  S SIS P+GED+ KFNKK PKE   S+LT
Subjt:  MDQKNHTRHHPSHGGT---------------HSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLT

Query:  KMATEGKDMSTEEVRIQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYF
        K+  +GK+MS E+VR+QGE    KDKL  +YGHEEDLLEFG+ G+S IYE+CCS S Q+LLLPTDSK +FVLSSGRWS+D E ESK + PTIDQEFEQYF
Subjt:  KMATEGKDMSTEEVRIQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYF

Query:  SGILPSLDP
        S +LPSLDP
Subjt:  SGILPSLDP

A0A6J1CPJ7 uncharacterized protein LOC1110135561.3e-3956.15Show/hide
Query:  HHPSHGGTHSFSGFQPWDTESFDVKKKRKLL--FEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPK--EEGESSLTKMATEGKDMSTEEVRIQGE
        HHPSH  T SF GFQPW+T  FDVKKKRKLL   EQLS PTPKLP WGP + S+SFPYG  + KFN+   K  EE E +LTK A E K++S  E  ++  
Subjt:  HHPSHGGTHSFSGFQPWDTESFDVKKKRKLL--FEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPK--EEGESSLTKMATEGKDMSTEEVRIQGE

Query:  KDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDP--EAESKIITPTIDQEFEQYFSGIL
               L ++YGH EDLLEFGS       E+C            DSKHDFVLSSGRW++DP  EAESK + PTIDQEFEQYFS +L
Subjt:  KDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDP--EAESKIITPTIDQEFEQYFSGIL

A0A6J1GGJ6 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like2.4e-10296.39Show/hide
Query:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
        MDQKNH RHHPSHGGTHSFS FQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDS KFNKKRPK EGESSLTKMATEGKDMSTEEVR
Subjt:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR

Query:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
        IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYE  CSDSTQNLLLPTDS HDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
Subjt:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP

A0A6J1IMA5 protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE-like1.6e-9892.82Show/hide
Query:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR
        MDQKNH RHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDS KFNKKRPKEEGESSLTKMA      STEEVR
Subjt:  MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVR

Query:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHD-FVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP
        IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDS HD FVLSSGRWSIDPEAESKI++P IDQEFEQYFSG+LPSLDP
Subjt:  IQGEKDGIKDKLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHD-FVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP

SwissProt top hitse value%identityAlignment
A8MR65 Protein FAR-RED-ELONGATED HYPOCOTYL 1-LIKE2.6e-0528.73Show/hide
Query:  ESFDVKKKRKLLFEQLS-LPTPKLPCWGPSSSSIS-------FPYGEDSLKFNKKRPKEEGESS---------LTKMATEGKDMSTEEVRIQGEKDGIKD
        ES D  KKRKL  E+   LP PK  C    +S ++         Y E S      +  +E  SS         + K +      S+         +    
Subjt:  ESFDVKKKRKLLFEQLS-LPTPKLPCWGPSSSSIS-------FPYGEDSLKFNKKRPKEEGESS---------LTKMATEGKDMSTEEVRIQGEKDGIKD

Query:  KLDLNYGHEEDLLEFGSHGNSSIYE-QCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT-PTIDQEFEQYFSGIL
        K+D  +  +ED  +F +H     ++ +   +  Q +L P +S   ++LSS RWS+  +   +  T PTIDQEFEQYFS ++
Subjt:  KLDLNYGHEEDLLEFGSHGNSSIYE-QCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT-PTIDQEFEQYFSGIL

Arabidopsis top hitse value%identityAlignment
AT2G37678.1 far-red elongated hypocotyl 15.0e-0428Show/hide
Query:  ESFDVKKKRKLLFEQLS----LPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGK-----DMSTEEVRIQGEKDGIKDKLDLNYGH
        E  +V KKRK   +Q      LP  K  C+   + S       ++   N +   E   SS     T  +     +M  E     GE   I  +  L+Y +
Subjt:  ESFDVKKKRKLLFEQLS----LPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGK-----DMSTEEVRIQGEKDGIKDKLDLNYGH

Query:  EEDLLEFGSHG--NSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT--PTIDQEFEQYFSGIL
            LE  S     + +Y     +  ++    + +   FVLSSGRW+++ +  +   T  PTIDQEFEQYFS ++
Subjt:  EEDLLEFGSHG--NSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT--PTIDQEFEQYFSGIL

AT5G02200.1 far-red-elongated hypocotyl1-like1.8e-0628.73Show/hide
Query:  ESFDVKKKRKLLFEQLS-LPTPKLPCWGPSSSSIS-------FPYGEDSLKFNKKRPKEEGESS---------LTKMATEGKDMSTEEVRIQGEKDGIKD
        ES D  KKRKL  E+   LP PK  C    +S ++         Y E S      +  +E  SS         + K +      S+         +    
Subjt:  ESFDVKKKRKLLFEQLS-LPTPKLPCWGPSSSSIS-------FPYGEDSLKFNKKRPKEEGESS---------LTKMATEGKDMSTEEVRIQGEKDGIKD

Query:  KLDLNYGHEEDLLEFGSHGNSSIYE-QCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT-PTIDQEFEQYFSGIL
        K+D  +  +ED  +F +H     ++ +   +  Q +L P +S   ++LSS RWS+  +   +  T PTIDQEFEQYFS ++
Subjt:  KLDLNYGHEEDLLEFGSHGNSSIYE-QCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT-PTIDQEFEQYFSGIL

AT5G02200.2 far-red-elongated hypocotyl1-like1.8e-0628.73Show/hide
Query:  ESFDVKKKRKLLFEQLS-LPTPKLPCWGPSSSSIS-------FPYGEDSLKFNKKRPKEEGESS---------LTKMATEGKDMSTEEVRIQGEKDGIKD
        ES D  KKRKL  E+   LP PK  C    +S ++         Y E S      +  +E  SS         + K +      S+         +    
Subjt:  ESFDVKKKRKLLFEQLS-LPTPKLPCWGPSSSSIS-------FPYGEDSLKFNKKRPKEEGESS---------LTKMATEGKDMSTEEVRIQGEKDGIKD

Query:  KLDLNYGHEEDLLEFGSHGNSSIYE-QCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT-PTIDQEFEQYFSGIL
        K+D  +  +ED  +F +H     ++ +   +  Q +L P +S   ++LSS RWS+  +   +  T PTIDQEFEQYFS ++
Subjt:  KLDLNYGHEEDLLEFGSHGNSSIYE-QCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIIT-PTIDQEFEQYFSGIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCAAAAGAACCACACCCGCCATCATCCATCTCACGGTGGCACTCACAGCTTCTCTGGCTTTCAACCATGGGATACTGAAAGCTTTGATGTAAAGAAGAAAAGAAA
ACTACTGTTTGAGCAACTAAGTTTACCCACACCTAAGCTACCATGTTGGGGTCCAAGTTCAAGTTCGATTAGCTTTCCCTATGGAGAAGATAGCCTCAAGTTCAACAAAA
AACGCCCAAAAGAAGAAGGAGAAAGCAGCCTTACAAAAATGGCAACAGAAGGAAAGGATATGTCCACGGAAGAGGTTCGAATACAGGGTGAGAAAGATGGTATCAAAGAT
AAGTTGGACCTAAACTATGGCCATGAGGAAGATCTATTGGAATTTGGAAGCCATGGAAATTCCAGCATTTATGAGCAATGTTGCAGTGACAGTACTCAAAATTTGCTCCT
CCCCACAGACTCCAAGCATGACTTTGTTTTGTCATCTGGGAGATGGAGCATAGACCCAGAGGCAGAGTCCAAGATTATCACACCAACCATTGATCAAGAGTTTGAGCAGT
ACTTTTCTGGGATTTTGCCATCCCTGGATCCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCAAAAGAACCACACCCGCCATCATCCATCTCACGGTGGCACTCACAGCTTCTCTGGCTTTCAACCATGGGATACTGAAAGCTTTGATGTAAAGAAGAAAAGAAA
ACTACTGTTTGAGCAACTAAGTTTACCCACACCTAAGCTACCATGTTGGGGTCCAAGTTCAAGTTCGATTAGCTTTCCCTATGGAGAAGATAGCCTCAAGTTCAACAAAA
AACGCCCAAAAGAAGAAGGAGAAAGCAGCCTTACAAAAATGGCAACAGAAGGAAAGGATATGTCCACGGAAGAGGTTCGAATACAGGGTGAGAAAGATGGTATCAAAGAT
AAGTTGGACCTAAACTATGGCCATGAGGAAGATCTATTGGAATTTGGAAGCCATGGAAATTCCAGCATTTATGAGCAATGTTGCAGTGACAGTACTCAAAATTTGCTCCT
CCCCACAGACTCCAAGCATGACTTTGTTTTGTCATCTGGGAGATGGAGCATAGACCCAGAGGCAGAGTCCAAGATTATCACACCAACCATTGATCAAGAGTTTGAGCAGT
ACTTTTCTGGGATTTTGCCATCCCTGGATCCCTGA
Protein sequenceShow/hide protein sequence
MDQKNHTRHHPSHGGTHSFSGFQPWDTESFDVKKKRKLLFEQLSLPTPKLPCWGPSSSSISFPYGEDSLKFNKKRPKEEGESSLTKMATEGKDMSTEEVRIQGEKDGIKD
KLDLNYGHEEDLLEFGSHGNSSIYEQCCSDSTQNLLLPTDSKHDFVLSSGRWSIDPEAESKIITPTIDQEFEQYFSGILPSLDP