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Carg13827 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13827
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationCarg_Chr17:3933751..3934408
RNA-Seq ExpressionCarg13827
SyntenyCarg13827
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7013828.1 hypothetical protein SDJN02_23997, partial [Cucurbita argyrosperma subsp. argyrosperma]4.1e-56100Show/hide
Query:  MASHPAYLGAPPLFMFTTPKEVNLIQVQENVYARRKVISEPIQVQTSDSTHNEDATQVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYP
        MASHPAYLGAPPLFMFTTPKEVNLIQVQENVYARRKVISEPIQVQTSDSTHNEDATQVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYP
Subjt:  MASHPAYLGAPPLFMFTTPKEVNLIQVQENVYARRKVISEPIQVQTSDSTHNEDATQVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYP

Query:  LANYISLERLSSLHK
        LANYISLERLSSLHK
Subjt:  LANYISLERLSSLHK

RVW27716.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.3e-0645.45Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R KVI E  QVQ S+S    + T     P+  +P   ST + D   +   D  IA+RK T ECT RPLYPL++Y+SL+ LS  HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

RVW52780.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]1.0e-0644.32Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R KVI E  QVQ S+S    + T     P++ +P   ST + D   +++    IA+RK T ECT RPLYPL++Y+SL+ LS  HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

RVW86031.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]7.8e-0745.45Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R K I E  QVQ S+S    + T     P+  +P   ST + D   +   D  IA+RK T ECT RPLYPL++Y+SL+ LSS HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

RVW90643.1 Copia protein [Vitis vinifera]3.0e-0644.32Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R KVI E  QVQ S+S    + T     P+  +P   ST + D   +   D  I +RK T ECT RPLYPL++Y+SL+ LS  HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

TrEMBL top hitse value%identityAlignment
A0A438CWZ0 Retrovirus-related Pol polyprotein from transposon RE16.4e-0745.45Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R KVI E  QVQ S+S    + T     P+  +P   ST + D   +   D  IA+RK T ECT RPLYPL++Y+SL+ LS  HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

A0A438DIH3 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-0644.32Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R KVI E  QVQ S+S    + T     P+  +P   ST + D   +   D  I +RK T ECT RPLYPL++Y+SL+ LS  HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

A0A438EYF5 Retrovirus-related Pol polyprotein from transposon RE14.9e-0744.32Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R KVI E  QVQ S+S    + T     P++ +P   ST + D   +++    IA+RK T ECT RPLYPL++Y+SL+ LS  HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

A0A438HNM6 Retrovirus-related Pol polyprotein from transposon TNT 1-943.8e-0745.45Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R K I E  QVQ S+S    + T     P+  +P   ST + D   +   D  IA+RK T ECT RPLYPL++Y+SL+ LSS HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

A0A438I1Q1 Copia protein1.4e-0644.32Show/hide
Query:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK
        VY+R KVI E  QVQ S+S    + T     P+  +P   ST + D   +   D  I +RK T ECT RPLYPL++Y+SL+ LS  HK
Subjt:  VYARRKVISEPIQVQTSDSTHNEDAT---QVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERLSSLHK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCTCACACCCCGCATATCTGGGTGCACCGCCTTTGTTCATGTTCACAACACCTAAAGAGGTAAACTTGATCCAAGTGCAAGAAAATGTATATGCTAGAAGGAAAGT
CATTTCAGAACCAATACAAGTCCAAACATCTGACTCTACTCACAATGAAGATGCAACACAGGTACCAATAGATAATAGACCAACATCCAACTCTACCCATAATGAAGATG
CAACACAGGTATCAATAAATGACAGAGCCATAGCTCTCCGGAAACCCACTGGAGAATGCACAAAACGACCTTTATACCCCCTAGCAAACTATATCTCTCTTGAAAGGCTA
TCCTCACTACACAAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCTCACACCCCGCATATCTGGGTGCACCGCCTTTGTTCATGTTCACAACACCTAAAGAGGTAAACTTGATCCAAGTGCAAGAAAATGTATATGCTAGAAGGAAAGT
CATTTCAGAACCAATACAAGTCCAAACATCTGACTCTACTCACAATGAAGATGCAACACAGGTACCAATAGATAATAGACCAACATCCAACTCTACCCATAATGAAGATG
CAACACAGGTATCAATAAATGACAGAGCCATAGCTCTCCGGAAACCCACTGGAGAATGCACAAAACGACCTTTATACCCCCTAGCAAACTATATCTCTCTTGAAAGGCTA
TCCTCACTACACAAA
Protein sequenceShow/hide protein sequence
MASHPAYLGAPPLFMFTTPKEVNLIQVQENVYARRKVISEPIQVQTSDSTHNEDATQVPIDNRPTSNSTHNEDATQVSINDRAIALRKPTGECTKRPLYPLANYISLERL
SSLHK