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Carg13926 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13926
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionU6 snRNA-associated Sm-like protein LSm1
Genome locationCarg_Chr08:4437910..4438376
RNA-Seq ExpressionCarg13926
SyntenyCarg13926
Gene Ontology termsGO:0000290 - deadenylation-dependent decapping of nuclear-transcribed mRNA (biological process)
GO:0006397 - mRNA processing (biological process)
GO:0009630 - gravitropism (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0000932 - P-body (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0000339 - RNA cap binding (molecular function)
InterPro domainsIPR044642 - U6 snRNA-associated Sm-like protein Lsm1/8


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025903.1 Sm-like protein LSM1B, partial [Cucurbita argyrosperma subsp. argyrosperma]7.7e-45100Show/hide
Query:  MIVSFYREVLTFAWRTNCFYVSANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        MIVSFYREVLTFAWRTNCFYVSANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
Subjt:  MIVSFYREVLTFAWRTNCFYVSANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
XP_004141715.1 sm-like protein LSM1B [Cucumis sativus]4.4e-2483.33Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
XP_022154301.1 sm-like protein LSM1B [Momordica charantia]2.6e-2483.33Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
XP_022964148.1 sm-like protein LSM1B [Cucurbita moschata]5.2e-2586.11Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
XP_023515193.1 sm-like protein LSM1B isoform X1 [Cucurbita pepo subsp. pepo]1.2e-2484.72Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSA+EIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
TrEMBL top hitse value%identityAlignment
A0A6J1DNB5 U6 snRNA-associated Sm-like protein LSm11.2e-2483.33Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
A0A6J1GSW8 U6 snRNA-associated Sm-like protein LSm12.1e-2483.33Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
A0A6J1HJZ1 U6 snRNA-associated Sm-like protein LSm12.5e-2586.11Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
A0A6J1JPU7 U6 snRNA-associated Sm-like protein LSm12.1e-2483.33Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGEL++EKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
A0A6J1KC94 U6 snRNA-associated Sm-like protein LSm12.5e-2586.11Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
SwissProt top hitse value%identityAlignment
O15116 U6 snRNA-associated Sm-like protein LSm14.1e-0955.17Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEI
        AN VL  + ER+ VG  Y DIP G++V+RGENVVLLGE+++EKE   P +  VS  EI
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEI
Q5E9Z8 U6 snRNA-associated Sm-like protein LSm14.1e-0955.17Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEI
        AN VL  + ER+ VG  Y DIP G++V+RGENVVLLGE+++EKE   P +  VS  EI
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEI
Q8LFL8 Sm-like protein LSM1B1.2e-2169.44Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEG+CERVIVG+ Y DIPLGLYVIRGENVVL+GEL+ E+EELPPHM  VS  EIKR   V+     L+
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
Q8VC85 U6 snRNA-associated Sm-like protein LSm14.1e-0955.17Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEI
        AN VL  + ER+ VG  Y DIP G++V+RGENVVLLGE+++EKE   P +  VS  EI
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEI
Q945P8 Sm-like protein LSM1A2.0e-1966.67Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLE + ERVIVGDLY DIPLGLY+IRGENVVL+GEL++EKEELP HM  V   EIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
Arabidopsis top hitse value%identityAlignment
AT1G19120.1 Small nuclear ribonucleoprotein family protein1.4e-2066.67Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLE + ERVIVGDLY DIPLGLY+IRGENVVL+GEL++EKEELP HM  V   EIKR    +     LK
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
AT3G14080.1 Small nuclear ribonucleoprotein family protein8.8e-2369.44Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEG+CERVIVG+ Y DIPLGLYVIRGENVVL+GEL+ E+EELPPHM  VS  EIKR   V+     L+
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
AT3G14080.2 Small nuclear ribonucleoprotein family protein8.8e-2369.44Show/hide
Query:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK
        ANAVLEG+CERVIVG+ Y DIPLGLYVIRGENVVL+GEL+ E+EELPPHM  VS  EIKR   V+     L+
Subjt:  ANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCGTTTCGTTCTATAGAGAAGTTTTAACATTCGCGTGGAGAACTAATTGTTTCTATGTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGG
TGATCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTC
ATGTCTCTGCTGTGGAGATTAAAAGGGTAAGTGATGTTGACTCGTCCATTGGATTTCTTAAA
mRNA sequenceShow/hide mRNA sequence
ATGATCGTTTCGTTCTATAGAGAAGTTTTAACATTCGCGTGGAGAACTAATTGTTTCTATGTTTCAGCAAATGCTGTTCTTGAAGGATCCTGTGAAAGAGTGATTGTTGG
TGATCTTTACAGCGATATTCCTTTAGGTCTCTATGTAATTCGAGGCGAAAACGTCGTTTTACTGGGCGAGCTGAACATGGAGAAAGAGGAGCTCCCTCCACACATGACTC
ATGTCTCTGCTGTGGAGATTAAAAGGGTAAGTGATGTTGACTCGTCCATTGGATTTCTTAAA
Protein sequenceShow/hide protein sequence
MIVSFYREVLTFAWRTNCFYVSANAVLEGSCERVIVGDLYSDIPLGLYVIRGENVVLLGELNMEKEELPPHMTHVSAVEIKRVSDVDSSIGFLK