CuGenDBv2

Gene ID	Carg13930
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	30S ribosomal protein S11, chloroplastic
Genome location	Carg_Chr08:4410051..4410652
RNA-Seq Expression	Carg13930
Synteny	Carg13930
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0019843 - rRNA binding (molecular function)
InterPro domains	IPR001971 - Ribosomal protein S11 IPR036967 - Ribosomal protein S11 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ALO21945.1 ribosomal protein S11 [Cucurbita cordata]

2.7e-21

81.94

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK PRRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

CUR03469.1 rps11 [Acacia jibberdingensis]

1.3e-20

79.17

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRG+VISWSS  TC FK PRRGTPFA QTAA NAIR V DQG+Q+AEVMIKG+GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

KAG7025899.1 30S ribosomal protein S11, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

4.6e-45

100

Show/hide

Query:  MFFGHVYSIKLVQYGYVPNIPPHVRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        MFFGHVYSIKLVQYGYVPNIPPHVRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
Subjt:  MFFGHVYSIKLVQYGYVPNIPPHVRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

YP_009447483.1 ribosomal protein S11 [Cucurbita maxima]

2.7e-21

81.94

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK PRRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

YP_009752191.1 ribosomal protein S11 [Linnaeosicyos amara]

1.0e-20

80.56

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK  RRGTPFA QTAA+NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

TrEMBL top hits

e value

%identity

Alignment

A0A0S2IE02 Ribosomal protein S11

1.3e-21

81.94

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK PRRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

A0A0S2IG71 Ribosomal protein S11

1.3e-21

81.94

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK PRRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

A0A0S2IGL1 Ribosomal protein S11

1.3e-21

81.94

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK PRRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

A0A0S2IHL1 Ribosomal protein S11

1.3e-21

81.94

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK PRRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

A0A2H4T1X3 30S ribosomal protein S11, chloroplastic

1.3e-21

81.94

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK PRRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

SwissProt top hits

e value

%identity

Alignment

A0ZZ68 30S ribosomal protein S11, chloroplastic

3.9e-23

80.56

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK  RRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

A4QJE8 30S ribosomal protein S11, chloroplastic

8.7e-23

80.56

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK  RRGTPFA QTAA NAIRAV DQGIQ+AEV IKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

A4QJN2 30S ribosomal protein S11, chloroplastic

8.7e-23

80.56

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK  RRGTPFA QTAA NAIRAV DQGIQ+AEV IKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

B1A968 30S ribosomal protein S11, chloroplastic

8.7e-23

79.17

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC F+  RRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

Q2L937 30S ribosomal protein S11, chloroplastic

3.9e-23

80.56

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC FK  RRGTPFA QTAA NAIRAV DQG+Q+AEVMIKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

Arabidopsis top hits

e value

%identity

Alignment

ATCG00750.1 ribosomal protein S11

3.1e-23

77.78

Show/hide

Query:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS
        VRGRVISWSS  TC F+  RRGTPFA QTAA NAIRAV DQG+Q+AEV IKG GLGRDAA RAIRRSG L S
Subjt:  VRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTTTCGGCCACGTGTACTCCATCAAACTTGTACAGTACGGCTACGTTCCAAATATTCCTCCACATGTACGGGGTCGGGTAATTTCTTGGTCCTCCACTCGTACTTG
TGAATTCAAAAGTCCAAGAAGAGGGACACCATTTGCTACTCAAACCGCAGCAAAAAATGCTATTCGGGCAGTAGAAGATCAAGGCATACAACAAGCAGAAGTCATGATAA
AGGGCTCTGGTCTCGGAAGAGATGCAGCGTCAAGAGCTATTCGTAGAAGCGGGACATTACCGTCCTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFFGHVYSIKLVQYGYVPNIPPHVRGRVISWSSTRTCEFKSPRRGTPFATQTAAKNAIRAVEDQGIQQAEVMIKGSGLGRDAASRAIRRSGTLPS

Carg13930 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome