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Carg13936 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13936
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptiontranscription initiation factor TFIID subunit 9
Genome locationCarg_Chr08:4363757..4364790
RNA-Seq ExpressionCarg13936
SyntenyCarg13936
Gene Ontology termsGO:0043966 - histone H3 acetylation (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0051123 - RNA polymerase II preinitiation complex assembly (biological process)
GO:0000124 - SAGA complex (cellular component)
GO:0005669 - transcription factor TFIID complex (cellular component)
GO:0003713 - transcription coactivator activity (molecular function)
GO:0016251 - RNA polymerase II general transcription initiation factor activity (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003162 - Transcription initiation factor TAFII31


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6575445.1 Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2253.54Show/hide
Query:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR
        G+RG +E++EG++DLPRDAKI  T  +SM                                    +A + CD V LA QSKVNFSFS+P PREVLLELAR
Subjt:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR

Query:  NRNKIPLPRSIGGPGIAIPPNQDTLLS
        NRNKIPLPRSIGGPGIA+PP+QDTLLS
Subjt:  NRNKIPLPRSIGGPGIAIPPNQDTLLS

KAG6593551.1 Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. sororia]9.6e-3497.47Show/hide
Query:  SCTGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGP
        S  GERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGP
Subjt:  SCTGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGP

KAG7013987.1 Transcription initiation factor TFIID subunit 9 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-2253.54Show/hide
Query:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR
        G+RG +E++EG++DLPRDAKI  T  +SM                                    +A + CD V LA QSKVNFSFS+P PREVLLELAR
Subjt:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR

Query:  NRNKIPLPRSIGGPGIAIPPNQDTLLS
        NRNKIPLPRSIGGPGIA+PP+QDTLLS
Subjt:  NRNKIPLPRSIGGPGIAIPPNQDTLLS

KAG7025893.1 Transcription initiation factor TFIID subunit 9, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-56100Show/hide
Query:  MQVSCTGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTG
        MQVSCTGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTG
Subjt:  MQVSCTGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTG

Query:  KSNQSKPWRGLLG
        KSNQSKPWRGLLG
Subjt:  KSNQSKPWRGLLG

XP_022953465.1 transcription initiation factor TFIID subunit 9 [Cucurbita moschata]1.3e-2253.54Show/hide
Query:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR
        G+RG +E++EG++DLPRDAKI  T  +SM                                    +A + CD V LA QSKVNFSFS+P PREVLLELAR
Subjt:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR

Query:  NRNKIPLPRSIGGPGIAIPPNQDTLLS
        NRNKIPLPRSIGGPGIA+PP+QDTLLS
Subjt:  NRNKIPLPRSIGGPGIAIPPNQDTLLS

TrEMBL top hitse value%identityAlignment
A0A1S3CGN5 transcription initiation factor TFIID subunit 9 isoform X21.0e-2071.05Show/hide
Query:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS
        D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGIA+PP+QDTLLS
Subjt:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS

A0A5A7UW56 Transcription initiation factor TFIID subunit 9 isoform X21.0e-2071.05Show/hide
Query:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS
        D+  DA++    + +A + CD V LA QSKVNFSFS+P PREVLLELARNRNKIPLPRSIGGPGIA+PP+QDTLLS
Subjt:  DLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS

A0A6J1CSB1 transcription initiation factor TFIID subunit 95.3e-2251.18Show/hide
Query:  GERGSEEITEGEQDLPRDAKI--EFTRSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR
        GERGS+E+TEG++DLPRDA+I     +SM                                    +A + CD V LA QSKVNFSFS+P PREVLLELAR
Subjt:  GERGSEEITEGEQDLPRDAKI--EFTRSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR

Query:  NRNKIPLPRSIGGPGIAIPPNQDTLLS
        NRNKIPLPR+IGGPGIA+PP+ D L+S
Subjt:  NRNKIPLPRSIGGPGIAIPPNQDTLLS

A0A6J1GPP8 transcription initiation factor TFIID subunit 96.3e-2353.54Show/hide
Query:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR
        G+RG +E++EG++DLPRDAKI  T  +SM                                    +A + CD V LA QSKVNFSFS+P PREVLLELAR
Subjt:  GERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVLLELAR

Query:  NRNKIPLPRSIGGPGIAIPPNQDTLLS
        NRNKIPLPRSIGGPGIA+PP+QDTLLS
Subjt:  NRNKIPLPRSIGGPGIAIPPNQDTLLS

A0A6J1JZ27 transcription initiation factor TFIID subunit 97.0e-2250.76Show/hide
Query:  QVSCTGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVL
        + S  G+RG +E++EG++DLPRDA+I  T  +SM                                    +A + CD V LA QSKVNFSFS+P PREVL
Subjt:  QVSCTGERGSEEITEGEQDLPRDAKIEFT--RSM------------------------------------QARLLCDGVTLAFQSKVNFSFSRPSPREVL

Query:  LELARNRNKIPLPRSIGGPGIAIPPNQDTLLS
        LELARNRNKIPLPRSIGGPGIA+PP+ DTLLS
Subjt:  LELARNRNKIPLPRSIGGPGIAIPPNQDTLLS

SwissProt top hitse value%identityAlignment
Q09869 Transcription initiation factor TFIID subunit 96.1e-0734.41Show/hide
Query:  QDLPRDAKI--EFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLL--SQLSTGKSNQSKP
        Q L +D+++  E +R   A +  + V LA  S++N SF+ P P+E LLELA  RN+ PLP+     G  +PP +  L   + + + ++ Q++P
Subjt:  QDLPRDAKI--EFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLL--SQLSTGKSNQSKP

Q16594 Transcription initiation factor TFIID subunit 91.0e-0638.55Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSK
        DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G  +PP++  L +     KS Q K
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSK

Q17QQ4 Transcription initiation factor TFIID subunit 91.0e-0638.55Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSK
        DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G  +PP++  L +     KS Q K
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSK

Q8VI33 Transcription initiation factor TFIID subunit 91.0e-0638.55Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSK
        DAKI  + + +A +  D V LA Q + + SF+ P PR+ LL++AR RN+ PLP      G  +PP++  L +     KS Q K
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSK

Q9SYH2 Transcription initiation factor TFIID subunit 91.8e-1963.89Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS
        DA++    + +  + CD V LA QSKVNFSFS+P PREVLLELA +RNKIPLP+SI GPG+ +PP QDTLLS
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS

Arabidopsis top hitse value%identityAlignment
AT1G54140.1 TATA binding protein associated factor 21kDa subunit1.3e-2063.89Show/hide
Query:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS
        DA++    + +  + CD V LA QSKVNFSFS+P PREVLLELA +RNKIPLP+SI GPG+ +PP QDTLLS
Subjt:  DAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTTTCATGTACAGGTGAAAGGGGCAGTGAGGAAATAACTGAGGGAGAGCAGGACCTGCCAAGGGATGCAAAGATTGAGTTTACTCGGAGCATGCAGGCAAGGCT
GCTATGTGATGGTGTGACGCTTGCTTTCCAGTCAAAAGTTAATTTCAGCTTCTCACGACCTTCTCCAAGAGAGGTTCTTCTAGAGTTGGCCAGAAATAGAAACAAAATAC
CATTGCCAAGGTCCATTGGTGGGCCTGGTATCGCCATTCCACCCAATCAAGACACATTGCTCTCCCAACTATCAACTGGCAAAAGCAACCAGTCGAAACCATGGAGGGGC
CTTCTGGGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTTTCATGTACAGGTGAAAGGGGCAGTGAGGAAATAACTGAGGGAGAGCAGGACCTGCCAAGGGATGCAAAGATTGAGTTTACTCGGAGCATGCAGGCAAGGCT
GCTATGTGATGGTGTGACGCTTGCTTTCCAGTCAAAAGTTAATTTCAGCTTCTCACGACCTTCTCCAAGAGAGGTTCTTCTAGAGTTGGCCAGAAATAGAAACAAAATAC
CATTGCCAAGGTCCATTGGTGGGCCTGGTATCGCCATTCCACCCAATCAAGACACATTGCTCTCCCAACTATCAACTGGCAAAAGCAACCAGTCGAAACCATGGAGGGGC
CTTCTGGGGTAAGGTAGTAGAACAAGGGGTTCGTCTCGGAGGAGGATCAACCTGAAAGAGGAGGTTGTTTGGTCCTCTTGTGCCACCTTTTTGAGATCGCCATTCGCAAG
AAAGGAGGAGTGTTTTCCTTGATCGATTTTGCTATGACCCCATTGAAGAAAAAAGAGAGTCGAGTCTAGAGTGACACG
Protein sequenceShow/hide protein sequence
MQVSCTGERGSEEITEGEQDLPRDAKIEFTRSMQARLLCDGVTLAFQSKVNFSFSRPSPREVLLELARNRNKIPLPRSIGGPGIAIPPNQDTLLSQLSTGKSNQSKPWRG
LLG