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Carg13960 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13960
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description40S ribosomal protein S23
Genome locationCarg_Chr08:4231989..4232578
RNA-Seq ExpressionCarg13960
SyntenyCarg13960
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0051762 - sesquiterpene biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0004497 - monooxygenase activity (molecular function)
GO:0005506 - iron ion binding (molecular function)
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (molecular function)
GO:0020037 - heme binding (molecular function)
InterPro domainsIPR005680 - Ribosomal protein S23, eukaryotic/archaeal
IPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAD4384398.1 hypothetical protein E3N88_24566 [Mikania micrantha]1.7e-69100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

KAF3624792.1 40S ribosomal protein S23 [Capsicum annuum]1.7e-69100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

KAF3635488.1 40S ribosomal protein S23 [Capsicum annuum]1.7e-69100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

KAF3682263.1 40S ribosomal protein S23 [Capsicum annuum]1.7e-69100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

KAG6580588.1 40S ribosomal protein S23, partial [Cucurbita argyrosperma subsp. sororia]1.7e-69100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

TrEMBL top hitse value%identityAlignment
A0A059A7I0 Uncharacterized protein8.3e-70100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A1U7W217 40S ribosomal protein S238.3e-70100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A251UBC5 Putative ribosomal protein S12/S238.3e-70100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A4Y7KWG1 Uncharacterized protein8.3e-70100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

A0A6J1KCN2 40S ribosomal protein S238.3e-70100Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S232.5e-7198.53Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

P49201 40S ribosomal protein S23-21.5e-6896.32Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Q9GRJ3 40S ribosomal protein S233.7e-5983.46Show/hide
Query:  RKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGH
        RKLK+HRR QRW DK YKKSHLG  WK  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVP DGCLN+IEENDEVL+AGFGRKGH
Subjt:  RKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGH

Query:  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        AVGDIPGVRFKVVKV+ VSLLAL+K+KKE+PRS
Subjt:  AVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Q9M5Z9 40S ribosomal protein S235.5e-7198.53Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGA RKLKSHRR QRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Q9SF35 40S ribosomal protein S23-17.0e-6694.12Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

Arabidopsis top hitse value%identityAlignment
AT3G09680.1 Ribosomal protein S12/S23 family protein5.0e-6794.12Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLK  R  QRWADK YKKS+ GNEWKKPFA SSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

AT5G02960.1 Ribosomal protein S12/S23 family protein1.1e-6996.32Show/hide
Query:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
        MGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR
Subjt:  MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGR

Query:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
        KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Subjt:  KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS

ATCG00065.1 ribosomal protein S12A3.7e-0636.26Show/hide
Query:  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
        N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+PGVR+ +V+
Subjt:  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK

ATCG00905.1 ribosomal protein S12C3.7e-0636.26Show/hide
Query:  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
        N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+PGVR+ +V+
Subjt:  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK

ATCG01230.1 ribosomal protein S12B3.7e-0636.26Show/hide
Query:  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK
        N  K P   G    +G       I  K+PNSA+RK ARV+L  +G +I A++P  G  + ++E+  VL+     +G  V D+PGVR+ +V+
Subjt:  NEWKKP-FAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGCGGGGCGCAAGTTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAATCCTACAAGAAATCCCATCTTGGGAATGAATGGAAGAAGCCATTTGCCGGATC
TTCCCATGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGGAAGTGTGCAAGAGTTCAGCTTATTAAAAACGGGAAGAAGA
TTGCTGCCTTCGTCCCGAACGACGGGTGTTTGAACTATATTGAAGAGAACGACGAGGTTCTCATTGCTGGATTCGGTAGAAAAGGACATGCTGTGGGTGATATTCCTGGA
GTCAGATTCAAGGTGGTGAAAGTGTCGGGTGTATCTTTGCTGGCTCTCTTCAAGGAAAAGAAGGAGAAGCCGAGGTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGCGGGGCGCAAGTTGAAGTCCCACCGTAGAAGGCAAAGGTGGGCTGACAAATCCTACAAGAAATCCCATCTTGGGAATGAATGGAAGAAGCCATTTGCCGGATC
TTCCCATGCAAAAGGCATTGTTCTAGAAAAGATTGGTATTGAGGCTAAGCAGCCTAACTCTGCTATTAGGAAGTGTGCAAGAGTTCAGCTTATTAAAAACGGGAAGAAGA
TTGCTGCCTTCGTCCCGAACGACGGGTGTTTGAACTATATTGAAGAGAACGACGAGGTTCTCATTGCTGGATTCGGTAGAAAAGGACATGCTGTGGGTGATATTCCTGGA
GTCAGATTCAAGGTGGTGAAAGTGTCGGGTGTATCTTTGCTGGCTCTCTTCAAGGAAAAGAAGGAGAAGCCGAGGTCTTGA
Protein sequenceShow/hide protein sequence
MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPG
VRFKVVKVSGVSLLALFKEKKEKPRS