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Carg13978 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg13978
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionMediator of RNA polymerase II transcription subunit 21
Genome locationCarg_Chr02:6781417..6784937
RNA-Seq ExpressionCarg13978
SyntenyCarg13978
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0050832 - defense response to fungus (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0043078 - polar nucleus (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR021384 - Mediator complex, subunit Med21
IPR037212 - Mediator complex, subunit Med7/Med21-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605829.1 Mediator of RNA polymerase II transcription subunit 21, partial [Cucurbita argyrosperma subsp. sororia]4.4e-6599.28Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNC+NLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_022153730.1 mediator of RNA polymerase II transcription subunit 21 [Momordica charantia]7.8e-6297.1Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTEDSAN AEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_022958635.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita moschata]2.6e-65100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_023532119.1 mediator of RNA polymerase II transcription subunit 21 [Cucurbita pepo subsp. pepo]1.7e-6498.55Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPT+DSANF EQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

XP_038893979.1 mediator of RNA polymerase II transcription subunit 21-like [Benincasa hispida]5.1e-6194.93Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVN IAALAFNTFGTLQRDAPPVRLSPNYPEPP HEPTEDSAN AEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQL+AAE+EL QVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

TrEMBL top hitse value%identityAlignment
A0A0A0KZ00 Mediator of RNA polymerase II transcription subunit 216.0e-6093.48Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTED+A  AEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
         VGQELQKQL+AAEKEL QVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A5A7TEZ9 Mediator of RNA polymerase II transcription subunit 217.9e-6093.48Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPP  EPTEDSA  AEQPKLMSAALVKAAKQFD LVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
         VGQELQKQL+AAE+EL QVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A6J1DHM9 Mediator of RNA polymerase II transcription subunit 213.8e-6297.1Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS NYPEPP  EPTEDSAN AEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A6J1H2M0 Mediator of RNA polymerase II transcription subunit 211.3e-65100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

A0A6J1K432 Mediator of RNA polymerase II transcription subunit 211.3e-65100Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
        MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEND

Query:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
Subjt:  AVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

SwissProt top hitse value%identityAlignment
C0LU16 Mediator of RNA polymerase II transcription subunit 211.7e-5179.86Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEP-TEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP     T+D+  F EQPK +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEP-TEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEN

Query:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        D VGQELQKQLEAAEKELKQVQELF Q ADNCLN+KK +
Subjt:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD

Q2TBU8 Mediator of RNA polymerase II transcription subunit 214.5e-0427.01Show/hide
Query:  DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAE
        D ++QLQ+ VN++A    N  G LQ+  PP   S       +  P  PTE+ A      +L +A + + AK  DVL+ +LP  +     Q   + +L+ E
Subjt:  DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAE

Query:  NDAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLK
        N      L+  +   +  L+++Q   + +A + L  +
Subjt:  NDAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLK

Q7ZTI5 Mediator of RNA polymerase II transcription subunit 215.3e-0527.74Show/hide
Query:  DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAE
        D ++QLQ+ VN++A    N  G LQ+ APP   S       +  P  PTE+ A      +L +A + + AK  DVL+ +LP  +     Q   + +L+ E
Subjt:  DIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLS---PNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAE

Query:  NDAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLK
        N      L++ +   +  L+++Q   + +A + L  +
Subjt:  NDAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLK

Arabidopsis top hitse value%identityAlignment
AT4G04780.1 mediator 211.2e-5279.86Show/hide
Query:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEP-TEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEN
        MDIISQLQEQVNTIAA+ FN FGTLQRDAPPV+LSPNYPEPP     T+D+  F EQPK +SA LVKAAKQFD LVAALPLS+GGE  QLKRIAELQ EN
Subjt:  MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEP-TEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAEN

Query:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD
        D VGQELQKQLEAAEKELKQVQELF Q ADNCLN+KK +
Subjt:  DAVGQELQKQLEAAEKELKQVQELFSQVADNCLNLKKAD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATTATTTCCCAACTACAGGAACAAGTCAATACAATTGCTGCTTTAGCTTTCAATACTTTTGGGACATTGCAGAGAGATGCTCCTCCAGTTCGTTTATCTCCTAA
TTACCCCGAACCTCCGCCTCACGAACCTACAGAGGACAGTGCAAACTTCGCAGAGCAGCCCAAGCTAATGAGTGCCGCTTTGGTGAAAGCCGCTAAGCAGTTTGATGTAT
TAGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCCGAGAACGATGCTGTAGGTCAAGAACTTCAAAAGCAGCTA
GAAGCAGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAAAGCAGACTGA
mRNA sequenceShow/hide mRNA sequence
ATTTTACTCTCTCGTGCTCCGCCCGGTCACGTCGTCTCCCCCTCCCTTTCAGCCGTTCAGTGTCGCCACCGCTTCTGTCCGGTCCTTGTCGCCGCCGCCTCTCTCTGGTC
AGTGCTGCCGCCGCAGCCTCCCTCAGGTTCGAAATGGACATTATTTCCCAACTACAGGAACAAGTCAATACAATTGCTGCTTTAGCTTTCAATACTTTTGGGACATTGCA
GAGAGATGCTCCTCCAGTTCGTTTATCTCCTAATTACCCCGAACCTCCGCCTCACGAACCTACAGAGGACAGTGCAAACTTCGCAGAGCAGCCCAAGCTAATGAGTGCCG
CTTTGGTGAAAGCCGCTAAGCAGTTTGATGTATTAGTTGCAGCATTGCCTCTATCTGATGGAGGTGAAGAAGAGCAGTTGAAAAGGATTGCAGAACTACAGGCCGAGAAC
GATGCTGTAGGTCAAGAACTTCAAAAGCAGCTAGAAGCAGCAGAGAAGGAATTAAAACAGGTTCAGGAGCTTTTCAGCCAAGTTGCAGATAATTGCTTGAACTTGAAGAA
AGCAGACTGAAAGATTTCAAGGTTATAATAGTAGATCAATCAAATGCATTCATTCCTTTCTTCCCAATTCAATGCAACTTAGAACAGGTGTGTTAATTTTCTGCGCCACT
TTGTCCATTTTCTCATCGTTTTTTTAGCTCAACTCGGTAGAAGATTCATGATGCCTAACCCCAAATTGCCTCTCTTTAGCTTCTAGCGGATGTTCAAAGTTGTCAAAGTA
ATTGCAAGTTAGCAATATATTATGTATTTG
Protein sequenceShow/hide protein sequence
MDIISQLQEQVNTIAALAFNTFGTLQRDAPPVRLSPNYPEPPPHEPTEDSANFAEQPKLMSAALVKAAKQFDVLVAALPLSDGGEEEQLKRIAELQAENDAVGQELQKQL
EAAEKELKQVQELFSQVADNCLNLKKAD