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Carg14046 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14046
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionSmall nuclear ribonucleoprotein E
Genome locationCarg_Chr02:6350889..6356129
RNA-Seq ExpressionCarg14046
SyntenyCarg14046
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0097525 - spliceosomal snRNP complex (cellular component)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR027078 - Small nuclear ribonucleoprotein E


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG5394187.1 hypothetical protein IGI04_024150 [Brassica rapa subsp. trilocularis]6.2e-1889.29Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MASTKVQRIMTQPIGFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

KAG6587776.1 hypothetical protein SDJN03_16341, partial [Cucurbita argyrosperma subsp. sororia]4.9e-2398.18Show/hide
Query:  RSLSCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH
        +SLSCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH
Subjt:  RSLSCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH

KAG7035720.1 putative small nuclear ribonucleoprotein E [Cucurbita argyrosperma subsp. argyrosperma]8.2e-87100Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWKWESEAGERQQSTSSTAVVGDWTTNRKRILEITQVAGGGTW
        MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWKWESEAGERQQSTSSTAVVGDWTTNRKRILEITQVAGGGTW
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWKWESEAGERQQSTSSTAVVGDWTTNRKRILEITQVAGGGTW

Query:  SQGIAPFRSLSCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH
        SQGIAPFRSLSCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH
Subjt:  SQGIAPFRSLSCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH

KHN31189.1 Small nuclear ribonucleoprotein E [Glycine soja]2.3e-2094.64Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MASTKVQR+MTQPIGFDEYMNLVLDDAEEVN+KKKS+KTLGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

TQE13957.1 hypothetical protein C1H46_000379 [Malus baccata]1.4e-1787.5Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MAS KVQRIMTQPIGFDEYMNLVLD+AEEV+IKKK++K+LGRILLKGDNITLMM+T
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

TrEMBL top hitse value%identityAlignment
A0A0K9QUA8 Small nuclear ribonucleoprotein E2.8e-1667.53Show/hide
Query:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MASTKVQRIMTQP                     IGFDEYMNLVLDDAEEVN+KKK++K+LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

A0A3N6QX92 Sm protein E3.0e-1889.29Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MASTKVQRIMTQPIGFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

A0A540NSG8 Sm protein E6.7e-1887.5Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MAS KVQRIMTQPIGFDEYMNLVLD+AEEV+IKKK++K+LGRILLKGDNITLMM+T
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

A0A565BF94 Sm protein E1.1e-1789.09Show/hide
Query:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        MASTKVQRIMTQPIGFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMN
Subjt:  MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN

A0A803KX85 Uncharacterized protein2.8e-1667.53Show/hide
Query:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MASTKVQRIMTQP                     IGFDEYMNLVLDDAEEVN+KKK++K+LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQP---------------------IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

SwissProt top hitse value%identityAlignment
A4FUI2 Small nuclear ribonucleoprotein E4.5e-1171.11Show/hide
Query:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS
        IGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS

P62303 Small nuclear ribonucleoprotein E4.5e-1171.11Show/hide
Query:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS
        IGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS

P62304 Small nuclear ribonucleoprotein E4.5e-1171.11Show/hide
Query:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS
        IGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+ +  +
Subjt:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS

Q7ZUG0 Small nuclear ribonucleoprotein E3.4e-1171.11Show/hide
Query:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS
        IGFDEYMNLVLDDAEEV++K K++K LGRI+LKGDNITL+ +  +
Subjt:  IGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQS

Q9VLV5 Probable small nuclear ribonucleoprotein E4.5e-1162.26Show/hide
Query:  RIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWK
        RI    +GFDEYMNLVLDDAEEV +K + ++ LGRI+LKGDNITL+ N    K
Subjt:  RIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWK

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein3.3e-1758.14Show/hide
Query:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT
        MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV+IKK ++K LGRILLKGDNITLMMNT
Subjt:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNT

AT2G18740.2 Small nuclear ribonucleoprotein family protein1.3e-0849.3Show/hide
Query:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNIKKKSKKTLG
        MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV+IKK ++K LG
Subjt:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNIKKKSKKTLG

AT4G30330.1 Small nuclear ribonucleoprotein family protein3.3e-1758.82Show/hide
Query:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN
        MASTKVQRIMTQPI                              GFDEYMNLVLD+AEEV+IKKK++K LGRILLKGDNITLMMN
Subjt:  MASTKVQRIMTQPI------------------------------GFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTGGATTTGATGAGTACATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAA
AAAAACACTCGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACACGCAATCTTGGAAGTGGGAAAGCGAAGCGGGTGAAAGACAGCAATCCACTAGTA
GCACCGCGGTGGTGGGAGATTGGACTACGAATCGAAAGAGAATTTTGGAGATAACCCAGGTGGCCGGTGGTGGGACATGGAGTCAGGGAATCGCACCCTTCAGGTCCTTG
TCTTGTGGGAATTTGGAGATGGCAATTGTTCATAATACATTGAATAGTATGACTCTGTGGCCCTCCCGATTCTTGGGGAAGCCTGGCTTTTACCGATGCCTTGCCCATGT
GAGTTTGGAGTATGCTTTCAGCAAAATGGGGTCTCAAATAGTACACTAG
mRNA sequenceShow/hide mRNA sequence
TCCTGGAAGTCTAACAGGCAAGGTCCTCTCACCTCCTAACCAATTTTGATAGCCATGGCGAGCACCAAGGTGCAGAGGATTATGACCCAGCCCATTGGATTTGATGAGTA
CATGAATTTAGTTCTCGATGACGCCGAGGAAGTAAATATTAAGAAAAAGAGTAAAAAAACACTCGGGAGGATTCTCCTCAAAGGAGACAACATTACGTTAATGATGAACA
CGCAATCTTGGAAGTGGGAAAGCGAAGCGGGTGAAAGACAGCAATCCACTAGTAGCACCGCGGTGGTGGGAGATTGGACTACGAATCGAAAGAGAATTTTGGAGATAACC
CAGGTGGCCGGTGGTGGGACATGGAGTCAGGGAATCGCACCCTTCAGGTCCTTGTCTTGTGGGAATTTGGAGATGGCAATTGTTCATAATACATTGAATAGTATGACTCT
GTGGCCCTCCCGATTCTTGGGGAAGCCTGGCTTTTACCGATGCCTTGCCCATGTGAGTTTGGAGTATGCTTTCAGCAAAATGGGGTCTCAAATAGTACACTAGCAGGTAG
AAAAGATAAATACCCCCTAAACTTTTGGGCGACATAGCTTTGTTGTGCTGGAACAATATGAGCCGAGGGATATATTGATAGTGAAATTTCAGGAAGCATAGAGGACCGTC
ACAAAATGGTCTACTCTGCATTCTATTACACTAGGAGTTTGATGCTTAGTTTTTATCTTCATGTGGTGAGAAAGCTAATGTTGTGGCT
Protein sequenceShow/hide protein sequence
MASTKVQRIMTQPIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLMMNTQSWKWESEAGERQQSTSSTAVVGDWTTNRKRILEITQVAGGGTWSQGIAPFRSL
SCGNLEMAIVHNTLNSMTLWPSRFLGKPGFYRCLAHVSLEYAFSKMGSQIVH