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Carg14071 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14071
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionDNA-directed RNA polymerase subunit beta
Genome locationCarg_Chr02:6242838..6243271
RNA-Seq ExpressionCarg14071
SyntenyCarg14071
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146667.1 uncharacterized protein LOC101206545 [Cucumis sativus]2.7e-4278.74Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHP LL+NNN RKFG TSAKRT   DSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGAFLVVPFCVFLIFSFSE-QTDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLIFSFSE-QTDSS

XP_008443827.1 PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo]3.8e-4479.53Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G+SA+PHPLL +  NNN RKFG TSAKRT DSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+L
Subjt:  MPIADSSFIFTGLSALPHPLLLS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGAFLVVPFCVFLIFSFSE-QTDSS
        LKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLIFSFSE-QTDSS

XP_022933449.1 uncharacterized protein LOC111440861 [Cucurbita moschata]9.2e-59100Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA
        MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA
Subjt:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA

Query:  FLVVPFCVFLIFSFSEQTDSS
        FLVVPFCVFLIFSFSEQTDSS
Subjt:  FLVVPFCVFLIFSFSEQTDSS

XP_023004836.1 uncharacterized protein LOC111498016 [Cucurbita maxima]1.0e-5797.52Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA
        MPIADSSFIFTGLSALPHPL+LSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRV+NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETED LKIGA
Subjt:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA

Query:  FLVVPFCVFLIFSFSEQTDSS
        FLVVPFCVFLIFSFSEQTDSS
Subjt:  FLVVPFCVFLIFSFSEQTDSS

XP_023531156.1 uncharacterized protein LOC111793484 [Cucurbita pepo subsp. pepo]6.6e-5797.56Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTG--DSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKI
        MPIADS+FIFTGLSALPHPLLLSNNNARKFGTTSAKRTG  DSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKI
Subjt:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTG--DSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKI

Query:  GAFLVVPFCVFLIFSFSEQTDSS
        GAFLVVPFCVFLIFSFSEQTDSS
Subjt:  GAFLVVPFCVFLIFSFSEQTDSS

TrEMBL top hitse value%identityAlignment
A0A0A0LWH4 Uncharacterized protein1.3e-4278.74Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G S +PHP LL+NNN RKFG TSAKRT   DSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETEDL
Subjt:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRT--GDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGAFLVVPFCVFLIFSFSE-QTDSS
        LKIGA LVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLIFSFSE-QTDSS

A0A1S3B903 uncharacterized protein LOC1034873291.8e-4479.53Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL
        M + DSSFIF G+SA+PHPLL +  NNN RKFG TSAKRT DSDS SST   Q KFPSLRV+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKETE+L
Subjt:  MPIADSSFIFTGLSALPHPLLLS--NNNARKFGTTSAKRTGDSDSISST---QLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDL

Query:  LKIGAFLVVPFCVFLIFSFSE-QTDSS
        LKIGAFLVVPFCVFL+FSFS+  +DSS
Subjt:  LKIGAFLVVPFCVFLIFSFSE-QTDSS

A0A6J1C0R6 uncharacterized protein LOC1110073013.4e-3570.49Show/hide
Query:  IADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISS---TQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIG
        +ADS+FIF+G SA+    L + NN R F T  AKRT DS +  S    Q +FPSLRV NPL+AR VV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIG
Subjt:  IADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISS---TQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIG

Query:  AFLVVPFCVFLIFSFSEQTDSS
        AFLVVPFCVFLI SF++QTDSS
Subjt:  AFLVVPFCVFLIFSFSEQTDSS

A0A6J1EZT4 uncharacterized protein LOC1114408614.5e-59100Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA
        MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA
Subjt:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA

Query:  FLVVPFCVFLIFSFSEQTDSS
        FLVVPFCVFLIFSFSEQTDSS
Subjt:  FLVVPFCVFLIFSFSEQTDSS

A0A6J1KT82 uncharacterized protein LOC1114980164.9e-5897.52Show/hide
Query:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA
        MPIADSSFIFTGLSALPHPL+LSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRV+NPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETED LKIGA
Subjt:  MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGA

Query:  FLVVPFCVFLIFSFSEQTDSS
        FLVVPFCVFLIFSFSEQTDSS
Subjt:  FLVVPFCVFLIFSFSEQTDSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G30845.1 unknown protein9.6e-2252.04Show/hide
Query:  SNNNARKF--GTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQT
        ++N  R F  G T   +  D    S+ +     ++V N ++ARS +AVL LGF+DAGYSGDWSRIG I+KETE+LLKI AFLVVP C+FL  SFS  +
Subjt:  SNNNARKF--GTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFSEQT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGATCGCAGATTCAAGTTTTATCTTCACGGGCCTCTCTGCCCTACCTCATCCCCTACTTCTCAGCAACAACAATGCCAGAAAATTCGGGACCACATCGGCAAAACG
AACCGGCGATTCCGATTCCATTTCATCGACGCAACTCAAATTTCCATCGCTGAGAGTTGCAAATCCACTTCTCGCCCGATCTGTCGTTGCGGTACTCGGATTAGGGTTCG
TCGATGCAGGGTACAGTGGCGATTGGTCTAGAATTGGCGCCATTACCAAGGAAACTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCCTTCTGCGTATTTCTG
ATTTTTTCTTTCTCCGAACAGACGGATTCTTCCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCGATCGCAGATTCAAGTTTTATCTTCACGGGCCTCTCTGCCCTACCTCATCCCCTACTTCTCAGCAACAACAATGCCAGAAAATTCGGGACCACATCGGCAAAACG
AACCGGCGATTCCGATTCCATTTCATCGACGCAACTCAAATTTCCATCGCTGAGAGTTGCAAATCCACTTCTCGCCCGATCTGTCGTTGCGGTACTCGGATTAGGGTTCG
TCGATGCAGGGTACAGTGGCGATTGGTCTAGAATTGGCGCCATTACCAAGGAAACTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCCTTCTGCGTATTTCTG
ATTTTTTCTTTCTCCGAACAGACGGATTCTTCCTGA
Protein sequenceShow/hide protein sequence
MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQLKFPSLRVANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFL
IFSFSEQTDSS