CuGenDBv2

Gene ID	Carg14126
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Transcription initiation factor IIE subunit beta
Genome location	Carg_Chr04:3914462..3917365
RNA-Seq Expression	Carg14126
Synteny	Carg14126
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component)
InterPro domains	IPR016656 - Transcription initiation factor TFIIE, beta subunit IPR040501 - TFA2, Winged helix domain 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6600555.1 hypothetical protein SDJN03_05788, partial [Cucurbita argyrosperma subsp. sororia]

9.4e-86

99.37

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Query:  YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKA
        YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKA
Subjt:  YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKA

Query:  VFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDM
        VFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMED+
Subjt:  VFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDM

KAG7031194.1 hypothetical protein SDJN02_05234, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.6e-123

100

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Query:  YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKA
        YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKA
Subjt:  YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKA

Query:  VFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAEDVPVIK
        VFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAEDVPVIK
Subjt:  VFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAEDVPVIK

Query:  TMKGIPMVCKFSCFLPSSH
        TMKGIPMVCKFSCFLPSSH
Subjt:  TMKGIPMVCKFSCFLPSSH

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

3.2e-49

58.62

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Query:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV
        LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARP  PA                                  TRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV

Query:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA
        DINSNKAV+DSLRNN KVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L        D  Y    +I+  V 
Subjt:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA

Query:  EDV
        +D+
Subjt:  EDV

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

2.9e-50

58.62

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Query:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV
        LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARPP PA                                  TRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV

Query:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA
        DINSNKAV+DSLRNN KVHYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YP+VMED+ A      ++L        D  Y    +I+  V 
Subjt:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA

Query:  EDV
        +D+
Subjt:  EDV

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]

9.2e-49

59.11

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Query:  LQEKLDRFKKQQERCRTTLTGIA----ASKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV
        LQE+LDRFKKQQERC+TTL+GIA    ASKSTPKFTP P +S  RPP PA                                  TRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCRTTLTGIA----ASKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV

Query:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA
        DINSNKAVFDSLRNN KVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L        D  Y    +I+  V 
Subjt:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA

Query:  EDV
        +D+
Subjt:  EDV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

1.4e-50

58.62

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Query:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV
        LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARPP PA                                  TRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV

Query:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA
        DINSNKAV+DSLRNN KVHYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKD+YP+VMED+ A      ++L        D  Y    +I+  V 
Subjt:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA

Query:  EDV
        +D+
Subjt:  EDV

A0A1S3BS95 Transcription initiation factor IIE subunit beta

1.5e-49

58.62

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Query:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV
        LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARP  PA                                  TRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV

Query:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA
        DINSNKAV+DSLRNN KVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L        D  Y    +I+  V 
Subjt:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA

Query:  EDV
        +D+
Subjt:  EDV

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

1.5e-49

58.62

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Query:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV
        LQE+LDRFKKQQERC++TL+GIAA    SKSTPKFTP P +SIARP  PA                                  TRQA TP QINEACYV
Subjt:  LQEKLDRFKKQQERCRTTLTGIAA----SKSTPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYV

Query:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA
        DINSNKAV+DSLRNN KVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YP+VMED+ A      ++L        D  Y    +I+  V 
Subjt:  DINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVA

Query:  EDV
        +D+
Subjt:  EDV

A0A6J1C4F9 Transcription initiation factor IIE subunit beta

5.8e-49

57.84

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Query:  LQEKLDRFKKQQERCRTTLTGIAASK--STPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYVDI
        LQ+KLDRFKKQQERC+TTLTGIAASK  STPKFTP P +   RPP PA                                  TR A TP QINEACYVDI
Subjt:  LQEKLDRFKKQQERCRTTLTGIAASK--STPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYVDI

Query:  NSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAED
        NSNKAVFDSLRNN KVHYDGRRF+YKSKHDLKDK+QLLYLIRKFPEGIAVIDLKDSYP VMED+ A      ++L        D  Y    +I+  V +D
Subjt:  NSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAED

Query:  VPVI
        + ++
Subjt:  VPVI

A0A6J1J372 Transcription initiation factor IIE subunit beta

5.8e-49

58.91

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Query:  LQEKLDRFKKQQERCRTTLTGIAASK---STPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYVD
        LQEKLDRFK+QQERC+TTL+GIAASK   +TP+FTP P +S  RPP PA                                  TRQA TP QINEACYVD
Subjt:  LQEKLDRFKKQQERCRTTLTGIAASK---STPKFTPPPPSSIARPPPPA----------------------------------TRQALTPLQINEACYVD

Query:  INSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAE
        INSNKAVFDSLRNN KVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYP+VMED+ A      ++L        D  Y    +I+  V +
Subjt:  INSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAE

Query:  DV
        D+
Subjt:  DV

SwissProt top hits

e value

%identity

Alignment

Q54KJ8 General transcription factor IIE subunit 2

2.9e-05

28.83

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Query:  INSNKAVFDSLRNNLKVHYDGR-RFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIR-GIV
        I+    + + LRNN K+   G  RFS+K K +++ +  +L L+  +P GI V +L +SY N   D+    + + IF  K      D ++    ++R  + 
Subjt:  INSNKAVFDSLRNNLKVHYDGR-RFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIR-GIV

Query:  AEDVPVIKTMK
        +E V + K++K
Subjt:  AEDVPVIKTMK

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

1.1e-34

46.63

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Query:  LQEKLDRFKKQQERCRTTLTGIAASK---STPKFTPPPPSSIARPPPPAT------------------------------------RQALTPLQINEACY
        L+E+LD+F KQQ +C++TL+ IA+S+   S+ +   P P++I +  P A                                     R ALTP QINE C+
Subjt:  LQEKLDRFKKQQERCRTTLTGIAASK---STPKFTPPPPSSIARPPPPAT------------------------------------RQALTPLQINEACY

Query:  VDINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFL
        VD+++NKAVFDSLR N K HYDGRRFSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKD+YPNVMED+ A S    I+L
Subjt:  VDINSNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFL

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

1.3e-29

42.77

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Query:  LQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPP-----------------------------------ATRQALTPLQINEACYVDIN
        L+E+LD+F KQQE+C++TL+ I++S++    +  P ++ ++ P                                      TR A T  QINEACYVD++
Subjt:  LQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPP-----------------------------------ATRQALTPLQINEACYVDIN

Query:  SNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIF
        +NKAVFDSLR N KVHYDGRRFSYK+ H++KDK QLL  + K  + I V DLKD+YPNVMED+ +      IF
Subjt:  SNKAVFDSLRNNLKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIF

Sequences

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CDS sequence

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TATCAAACGTCGACCCCCGACCCGACCGTCGTCTTTATCCACGGCGGTCGATTTTGTGGTATTCTAGTTACTCCCTTCTTCTTTTGTGGGCATTTGCAAGAAAAACTAGA
TAGGTTTAAGAAACAGCAAGAGAGGTGTCGGACTACCTTGACTGGCATTGCTGCATCCAAGTCTACTCCTAAGTTTACGCCTCCACCGCCTTCTTCCATTGCAAGACCTC
CGCCTCCTGCTACAAGGCAAGCCCTTACCCCACTGCAAATCAATGAAGCATGTTATGTTGATATTAATTCAAACAAAGCCGTTTTTGATAGTCTACGGAATAACCTAAAG
GTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCACGATCTGAAGGATAAGAATCAACTTCTTTACTTGATTCGGAAATTTCCAGAAGGCATTGCTGTTATTGA
TCTCAAGGACTCTTATCCAAACGTTATGGAAGATATGTATGCCTGCTCAAAGCGAAGAACAATATTTCTGAAGAAGAAGAGAATTGATATGCTAGATTACCTCTATTCCG
CGCAGTATCAAATTAGGGGCATTGTTGCCGAGGACGTGCCTGTGATCAAAACAATGAAAGGTATACCCATGGTGTGTAAGTTCTCTTGTTTTCTTCCATCTTCTCATTGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

YQTSTPDPTVVFIHGGRFCGILVTPFFFCGHLQEKLDRFKKQQERCRTTLTGIAASKSTPKFTPPPPSSIARPPPPATRQALTPLQINEACYVDINSNKAVFDSLRNNLK
VHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDSYPNVMEDMYACSKRRTIFLKKKRIDMLDYLYSAQYQIRGIVAEDVPVIKTMKGIPMVCKFSCFLPSSH

Carg14126 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome