CuGenDBv2

Gene ID	Carg14152
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	Small nuclear ribonucleoprotein Sm D2
Genome location	Carg_Chr04:4057774..4060349
RNA-Seq Expression	Carg14152
Synteny	Carg14152
Gene Ontology terms	GO:0006397 - mRNA processing (biological process) GO:0008380 - RNA splicing (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0030532 - small nuclear ribonucleoprotein complex (cellular component)
InterPro domains	IPR001163 - LSM domain, eukaryotic/archaea-type IPR010920 - LSM domain superfamily IPR027248 - Small nuclear ribonucleoprotein Sm D2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAA2614514.1 unnamed protein product [Spirodela intermedia]

6.0e-38

100

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

KAG6600580.1 putative small nuclear ribonucleoprotein Sm D2, partial [Cucurbita argyrosperma subsp. sororia]

6.0e-38

100

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

KAG7031220.1 putative small nuclear ribonucleoprotein Sm D2, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.0e-38

100

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

XP_014494508.1 small nuclear ribonucleoprotein Sm D2 [Vigna radiata var. radiata]

7.9e-38

98.77

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

XP_022942850.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata]

6.0e-38

100

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

TrEMBL top hits

e value

%identity

Alignment

A0A0B2Q033 Small nuclear ribonucleoprotein Sm D2

3.8e-38

98.77

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

A0A5N5KBI5 Small nuclear ribonucleoprotein Sm D2

3.8e-38

98.77

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

A0A6A4QKF7 Small nuclear ribonucleoprotein Sm D2

3.8e-38

98.77

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

A0A6J1FX13 Small nuclear ribonucleoprotein Sm D2

2.9e-38

100

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

A0A7I8JY04 Small nuclear ribonucleoprotein Sm D2

2.9e-38

100

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

SwissProt top hits

e value

%identity

Alignment

P62316 Small nuclear ribonucleoprotein Sm D2

3.1e-37

89.87

Show/hide

Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

P62317 Small nuclear ribonucleoprotein Sm D2

3.1e-37

89.87

Show/hide

Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

Q3SZF8 Small nuclear ribonucleoprotein Sm D2

3.1e-37

89.87

Show/hide

Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++P+NKDR+ISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

Q54NC5 Probable small nuclear ribonucleoprotein Sm D2

1.3e-35

88.89

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        M SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTEVPKT KGKKKA+PINKDRFISKMFLRGDSVI+VL+NP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

Q9VI10 Probable small nuclear ribonucleoprotein Sm D2

4.1e-37

89.87

Show/hide

Query:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +P+NKDRFISKMFLRGDSVI+VLRNP
Subjt:  SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

Arabidopsis top hits

e value

%identity

Alignment

AT2G47640.1 Small nuclear ribonucleoprotein family protein

2.4e-40

95.06

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

AT2G47640.2 Small nuclear ribonucleoprotein family protein

2.4e-40

95.06

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

AT2G47640.3 Small nuclear ribonucleoprotein family protein

2.4e-40

95.06

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

AT2G47640.4 Small nuclear ribonucleoprotein family protein

2.4e-40

95.06

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

AT3G62840.1 Small nuclear ribonucleoprotein family protein

2.4e-40

95.06

Show/hide

Query:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
        MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA P+N+DRFISKMFLRGDSVIIVLRNP
Subjt:  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAA
TGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTG
TCATCATTGTTCTTAGGAATCCC

mRNA sequence

Show/hide mRNA sequence

ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCAATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCT
TCTCCGGCTCTGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGAAGTACTTACTTCGAATCCTTTGCAGACTAACAAGAATGAAGAAGAGG
AATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTC
GATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCAT
CAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCC

Protein sequence

Show/hide protein sequence

MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP

Carg14152 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome