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Carg14224 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14224
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L23
Genome locationCarg_Chr04:4440084..4440605
RNA-Seq ExpressionCarg14224
SyntenyCarg14224
Gene Ontology termsGO:0010584 - pollen exine formation (biological process)
GO:0015789 - UDP-N-acetylgalactosamine transmembrane transport (biological process)
GO:0032543 - mitochondrial translation (biological process)
GO:1902183 - regulation of shoot apical meristem development (biological process)
GO:1903070 - negative regulation of ER-associated ubiquitin-dependent protein catabolic process (biological process)
GO:1903857 - negative regulation of cytokinin dehydrogenase activity (biological process)
GO:1990569 - UDP-N-acetylglucosamine transmembrane transport (biological process)
GO:0000139 - Golgi membrane (cellular component)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0005463 - UDP-N-acetylgalactosamine transmembrane transporter activity (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0003729 - mRNA binding (molecular function)
InterPro domainsIPR013025 - Ribosomal protein L25/L23
IPR012678 - Ribosomal protein L23/L15e core domain superfamily
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TYK15876.1 Nucleotide-binding, alpha-beta plait [Cucumis melo var. makuwa]6.3e-8594.83Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR

XP_008455593.1 PREDICTED: uncharacterized protein LOC103495731 isoform X1 [Cucumis melo]6.3e-8594.83Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR

XP_022943267.1 uncharacterized protein LOC111448049 [Cucurbita moschata]7.2e-8999.42Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR

XP_023531609.1 uncharacterized protein LOC111793793 [Cucurbita pepo subsp. pepo]6.5e-90100Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR

XP_038905477.1 uncharacterized protein LOC120091488 [Benincasa hispida]4.4e-8696.53Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNM+GKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
        IRIIEEDK+NMNKQSKSSIVEEGEAKRHWLHEKE VGLKTYKGFADRGRR IGGAE VE STKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR

TrEMBL top hitse value%identityAlignment
A0A0A0L0J2 Uncharacterized protein5.2e-8594.25Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKV+TLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSISPD+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAK+HWLHEKE VG+KTYKGFADRGRRR  GGAE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR

A0A1S3C191 uncharacterized protein LOC103495731 isoform X13.0e-8594.83Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR

A0A5D3CZJ7 Nucleotide-binding, alpha-beta plait3.0e-8594.83Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGF+VDKVRTLNM+GKKKKRGG+LIAKPDYKKAYVTLRNPLSIS D+YP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG+KTYKGFADRGRRRI GGAE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRI-GGAEAVEPSTKFPWSSMRSGR

A0A6J1EUM4 uncharacterized protein LOC1114360665.2e-8594.22Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLGRRV+HFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKE VG K YKGF++R RRR G AE VEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR

A0A6J1FSK6 uncharacterized protein LOC1114480493.5e-8999.42Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        M SRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
        IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR

SwissProt top hitse value%identityAlignment
A0KF23 50S ribosomal protein L232.1e-0645.76Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

A4ST04 50S ribosomal protein L232.7e-0645.76Show/hide
Query:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        I  K    A+K E+K  +  L+  EV+ VRTLNM GK K+ G  +  + D+KKAYVTL+
Subjt:  IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Q0ABH3 50S ribosomal protein L232.7e-0645.76Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL
        E+  K    A K EI++ +E L+  +V  VRT+ M GK+K+ G L   +PD+KKAYVTL
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTL

Q0I161 50S ribosomal protein L231.6e-0642.47Show/hide
Query:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI
        TN TE    I  K    A+K+EI   +E L+  +VD VRT+ + GK K+RG  +  + D+KKAYVTL+   S+
Subjt:  TNITE----IALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSI

Q605B4 50S ribosomal protein L231.2e-0641.67Show/hide
Query:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR
        +   +  P+ASK++IK  +E ++G +VD VR LN+ GK K+ G  +  + D+KKAYV L+
Subjt:  EIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLR

Arabidopsis top hitse value%identityAlignment
AT4G39880.1 Ribosomal protein L23/L15e family protein2.7e-5466.29Show/hide
Query:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP
        MGSRLG RVVHFANLPIKLLMP   TNI E ALKTIPSASKIEIKRVLESLYGF+V+KV TLNMDGKKKKRGGLLIAK DYKKAYVTLR+PLSIS D++P
Subjt:  MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYP

Query:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTY-KGFADRGRRRIG----GAEAVEPSTKFPWSSMR
        ++ IEED+++  K S S + EE + K HWL  KE   +  Y KG   RG  R      G  A   + KFPWS+MR
Subjt:  IRIIEEDKRNMNKQSKSSIVEEGEAKRHWLHEKEAVGLKTY-KGFADRGRRRIG----GAEAVEPSTKFPWSSMR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGCAGACTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAACTTCTTATGCCAACTTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
ATCTGCTTCCAAAATCGAAATCAAGCGCGTTCTCGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGATGGTAAGAAGAAGAAGCGCGGAGGGC
TTTTGATTGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTCTACCCCATCCGGATTATAGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAGTCCAGCATTGTTGAAGAGGGAGAGGCCAAGCGGCATTGGCTGCATGAAAAGGAAGCAGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAATTGGCGGCGCTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCCGGTAGGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGCAGACTCGGAAGAAGAGTTGTTCACTTCGCAAATCTTCCAATCAAACTTCTTATGCCAACTTCCTTCACCAACATCACTGAAATTGCTCTCAAAACCATTCC
ATCTGCTTCCAAAATCGAAATCAAGCGCGTTCTCGAGAGCCTCTACGGCTTTGAGGTCGATAAAGTTCGAACTCTCAACATGGATGGTAAGAAGAAGAAGCGCGGAGGGC
TTTTGATTGCAAAGCCTGATTACAAGAAGGCCTATGTTACTCTCAGGAATCCCTTGTCAATTTCTCCGGACGTCTACCCCATCCGGATTATAGAGGAGGACAAGAGGAAT
ATGAATAAACAGTCTAAGTCCAGCATTGTTGAAGAGGGAGAGGCCAAGCGGCATTGGCTGCATGAAAAGGAAGCAGTGGGACTCAAAACTTACAAGGGTTTTGCTGATAG
AGGCCGCCGACGAATTGGCGGCGCTGAAGCTGTTGAACCATCAACTAAGTTTCCTTGGAGTAGCATGAGGTCCGGTAGGTAG
Protein sequenceShow/hide protein sequence
MGSRLGRRVVHFANLPIKLLMPTSFTNITEIALKTIPSASKIEIKRVLESLYGFEVDKVRTLNMDGKKKKRGGLLIAKPDYKKAYVTLRNPLSISPDVYPIRIIEEDKRN
MNKQSKSSIVEEGEAKRHWLHEKEAVGLKTYKGFADRGRRRIGGAEAVEPSTKFPWSSMRSGR