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Carg14260 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14260
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description60S ribosomal protein L17
Genome locationCarg_Chr04:10682204..10685696
RNA-Seq ExpressionCarg14260
SyntenyCarg14260
Gene Ontology termsGO:0002181 - cytoplasmic translation (biological process)
GO:0006465 - signal peptide processing (biological process)
GO:0005787 - signal peptidase complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008235 - metalloexopeptidase activity (molecular function)
InterPro domainsIPR001063 - Ribosomal protein L22/L17
IPR005721 - Ribosomal protein L22/L17, eukaryotic/archaeal
IPR018260 - Ribosomal protein L22/L17, conserved site
IPR036394 - Ribosomal protein L22/L17 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032361.1 60S ribosomal protein L17 [Cucurbita argyrosperma subsp. argyrosperma]4.0e-92100Show/hide
Query:  MPSESCPWPRQKGTWRMFSPTSRLFRSDVSVEVSERTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRA
        MPSESCPWPRQKGTWRMFSPTSRLFRSDVSVEVSERTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRA
Subjt:  MPSESCPWPRQKGTWRMFSPTSRLFRSDVSVEVSERTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRA

Query:  HGRINPYMSSPCHIELILSERKSPSRKSLRPSWQRVNPKNLKLSAVVLHLDQYNYFLICFSKQNFDTFIIL
        HGRINPYMSSPCHIELILSERKSPSRKSLRPSWQRVNPKNLKLSAVVLHLDQYNYFLICFSKQNFDTFIIL
Subjt:  HGRINPYMSSPCHIELILSERKSPSRKSLRPSWQRVNPKNLKLSAVVLHLDQYNYFLICFSKQNFDTFIIL

KHG15528.1 60S ribosomal L17-1 -like protein [Gossypium arboreum]2.5e-4171.32Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLL+NAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE++ P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAVVLHLDQYNYFLICFSKQN
        + P+  K ++ + + + + + + C   +N
Subjt:  VNPKNLKLSAVVLHLDQYNYFLICFSKQN

XP_012477136.1 PREDICTED: 60S ribosomal protein L17-like isoform X1 [Gossypium raimondii]1.4e-4184.26Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLL+NAESNAEVKGLDVDSL+ISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE++   +K  R SW R
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKL
         N + L+L
Subjt:  VNPKNLKL

XP_022956721.1 60S ribosomal protein L17-2-like [Cucurbita moschata]3.8e-4283.78Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE+K P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAV
           K+ K  A+
Subjt:  VNPKNLKLSAV

XP_022998692.1 60S ribosomal protein L17-2 [Cucurbita maxima]3.8e-4283.78Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE+K P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAV
           K+ K  A+
Subjt:  VNPKNLKLSAV

TrEMBL top hitse value%identityAlignment
A0A0A0KPZ4 Uncharacterized protein1.6e-4181.08Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLL+NAESNAEVKGLDVDSLI+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE++ P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAV
           K+ K  A+
Subjt:  VNPKNLKLSAV

A0A0B0NLV0 60S ribosomal L17-1-like protein1.2e-4171.32Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLL+NAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE++ P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAVVLHLDQYNYFLICFSKQN
        + P+  K ++ + + + + + + C   +N
Subjt:  VNPKNLKLSAVVLHLDQYNYFLICFSKQN

A0A5A7STA3 60S ribosomal protein L17-21.6e-4181.08Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLL+NAESNAEVKGLDVDSLI+SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE++ P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAV
           K+ K  A+
Subjt:  VNPKNLKLSAV

A0A6J1GXB6 60S ribosomal protein L17-2-like1.8e-4283.78Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE+K P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAV
           K+ K  A+
Subjt:  VNPKNLKLSAV

A0A6J1K8N9 60S ribosomal protein L17-21.8e-4283.78Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR
        RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE+K P +K   P  Q 
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRKSLRPSWQR

Query:  VNPKNLKLSAV
           K+ K  A+
Subjt:  VNPKNLKLSAV

SwissProt top hitse value%identityAlignment
O48557 60S ribosomal protein L173.4e-4186.96Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK
        RTAQAK+RHSNGQGRWPVKSA+FILDLL+NAESNA+VKGLDVD+L +SHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE++ P +K
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK

P35266 60S ribosomal protein L17-11.1e-3984.78Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK
        RTAQ KNR  NGQGRWP KSAKF+LDLL+NAESNAEVKGLDVD+L ISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSE++ P +K
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK

P35267 60S ribosomal protein L17-23.1e-3983.7Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK
        RTAQ KNR  NGQGRWP KSA+F+LDLL+NAESNAEVKGLDVD+L ISHIQVNQAQKQRRRTYRAHGRINPYMS+PCHIELILSE++ P +K
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK

P51413 60S ribosomal protein L17-21.3e-4085.87Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK
        RTAQAKNRHSNGQGRWP KSA+F+LDLL+NAESNAEVKGLDVD+L ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSE++ P +K
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK

Q93VI3 60S ribosomal protein L17-11.3e-4085.87Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK
        RTAQAKNRHSNGQGRWP KSA+F+LDLL+NAESNAEVKGLDVD+L ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSE++ P +K
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK

Arabidopsis top hitse value%identityAlignment
AT1G27400.1 Ribosomal protein L22p/L17e family protein9.1e-4285.87Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK
        RTAQAKNRHSNGQGRWP KSA+F+LDLL+NAESNAEVKGLDVD+L ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSE++ P +K
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK

AT1G67430.1 Ribosomal protein L22p/L17e family protein9.1e-4285.87Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK
        RTAQAKNRHSNGQGRWP KSA+F+LDLL+NAESNAEVKGLDVD+L ISHIQVNQA KQRRRTYRAHGRINPYMS+PCHIELILSE++ P +K
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSERKSPSRK

AT1G67430.2 Ribosomal protein L22p/L17e family protein5.2e-1386.49Show/hide
Query:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEV
        RTAQAKNRHSNGQGRWP KSA+F+LDLL+NAESNAE+
Subjt:  RTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEV

ATCG00810.1 ribosomal protein L227.5e-0434.29Show/hide
Query:  PVKSAKFILDLLRNAESNA-EVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE
        P +    I  L+ +A +NA   KG    +L+IS  +VNQ    ++   RA GR  P   S CHI ++L +
Subjt:  PVKSAKFILDLLRNAESNA-EVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCTCAGAAAGTTGCCCTTGGCCAAGGCAAAAAGGTACTTGGAGGATGTTCTCGCCCACAAGCAGGCTATTCCGTTCCGACGTTTCTGTGGAGGTGTCGGAACGAAC
TGCACAGGCAAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCAAAATTTATTCTAGATCTTCTTAGGAATGCCGAGAGCAACGCTGAAGTGAAAG
GACTGGACGTTGATTCTCTCATCATATCCCACATTCAGGTGAACCAAGCACAGAAGCAAAGGCGTCGCACATACCGAGCTCACGGAAGAATTAACCCCTATATGTCATCT
CCATGCCACATTGAGCTTATTTTATCAGAAAGAAAGAGCCCGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAATCCAAAAAATCTCAAGCTCTCCGCAGTGGT
GCTTCATCTTGATCAATATAATTACTTCCTTATTTGTTTTTCAAAACAGAATTTTGATACATTTATCATTCTATAG
mRNA sequenceShow/hide mRNA sequence
AGAATTAGCATCACCCCGCCATGGTACCGTGCCTCTTCTAGATCTTCGACCTTTATTTTTCACCTCTTAATATCTGTTCATTGCTTATGATTCTTCACTCTCAGTAAGTA
TCTGAATTTAGTTGGATATTCATGTTCTTTTTAACAGGTTAAGTACTCAAGGGAGCCGGACAACCACACTGAGTATTACTGAATCGACGATCTGTTTTCGTGTTTATAGA
ATACACGAGAGACTGCACATGCCCTCAGAAAGTTGCCCTTGGCCAAGGCAAAAAGGTACTTGGAGGATGTTCTCGCCCACAAGCAGGCTATTCCGTTCCGACGTTTCTGT
GGAGGTGTCGGAACGAACTGCACAGGCAAAAAATAGGCATTCAAATGGACAAGGACGCTGGCCTGTTAAATCTGCAAAATTTATTCTAGATCTTCTTAGGAATGCCGAGA
GCAACGCTGAAGTGAAAGGACTGGACGTTGATTCTCTCATCATATCCCACATTCAGGTGAACCAAGCACAGAAGCAAAGGCGTCGCACATACCGAGCTCACGGAAGAATT
AACCCCTATATGTCATCTCCATGCCACATTGAGCTTATTTTATCAGAAAGAAAGAGCCCGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACGAGTAAATCCAAAAAATCT
CAAGCTCTCCGCAGTGGTGCTTCATCTTGATCAATATAATTACTTCCTTATTTGTTTTTCAAAACAGAATTTTGATACATTTATCATTCTATAGATGAGTTCTTCCGTAT
CCATTCCCCCTAATCTTGTAGTTTATGGTATCGCGATCGTGTTCGTTGTGTTGGGAATTCTTTTATAAATTTTGGATATTCATTCCTTCTAAGCAAATCGAGACTTCTTT
AACTTTCTGTGTTGGGTTCAGTTTATACTAGTTGTGGTTCAAACCTGGGATGGGGGCACTTGATAATTTTTTAATTATTTATTTATCAGTTTCTAGTAGTAAGTTTGGTT
TGGATAGGTTATGGTCTTTTGATCGAACCGGCTGTCTTTGTTGCTATCATAAATTTCAATACCAAAACATAACCAATACTGAAAGAGATTGATGATTAATTATTGATATG
TGAGATATGGTACAACACTATTTTTTTCTTTTGTTATTTTAATTAAAGTATT
Protein sequenceShow/hide protein sequence
MPSESCPWPRQKGTWRMFSPTSRLFRSDVSVEVSERTAQAKNRHSNGQGRWPVKSAKFILDLLRNAESNAEVKGLDVDSLIISHIQVNQAQKQRRRTYRAHGRINPYMSS
PCHIELILSERKSPSRKSLRPSWQRVNPKNLKLSAVVLHLDQYNYFLICFSKQNFDTFIIL