CuGenDBv2

Gene ID	Carg14263
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	nuclear pore complex protein NUP54-like
Genome location	Carg_Chr04:10674447..10675334
RNA-Seq Expression	Carg14263
Synteny	Carg14263
Gene Ontology terms	GO:0006607 - NLS-bearing protein import into nucleus (biological process) GO:0006999 - nuclear pore organization (biological process) GO:0036228 - protein localization to nuclear inner membrane (biological process) GO:0044613 - nuclear pore central transport channel (cellular component) GO:0017056 - structural constituent of nuclear pore (molecular function)
InterPro domains	IPR024864 - Nucleoporin Nup54/Nup57/Nup44

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601593.1 Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. sororia]

1.6e-55

100

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAEDKEMTDDPS
Subjt:  RDVRDMEIIMAEDKEMTDDPS

KAG7032358.1 Nuclear pore complex protein NUP54, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.6e-55

100

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAEDKEMTDDPS
Subjt:  RDVRDMEIIMAEDKEMTDDPS

XP_022957465.1 nuclear pore complex protein NUP54-like [Cucurbita moschata]

3.6e-55

99.17

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLA+MQEVLQQQTEAIARLGTVLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAEDKEMTDDPS
Subjt:  RDVRDMEIIMAEDKEMTDDPS

XP_022998033.1 nuclear pore complex protein NUP54-like [Cucurbita maxima]

1.1e-54

98.35

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLA+MQEVLQQQTEAIARLGTVLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDM+IIMAEDKEMTDDPS
Subjt:  RDVRDMEIIMAEDKEMTDDPS

XP_023515339.1 nuclear pore complex protein NUP54-like [Cucurbita pepo subsp. pepo]

1.4e-54

98.35

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLA+MQEVLQQQTEAIARLGTVLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAED EMTDDPS
Subjt:  RDVRDMEIIMAEDKEMTDDPS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KPW8 Nup54 domain-containing protein

9.3e-49

90.08

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKL+LITRQ K SGAELSRRVQNLL +TRGQ NGSG GNSIY QGSAKIHEQSLA+MQEVLQQQTEAIARLG VLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAEDKEM DD S
Subjt:  RDVRDMEIIMAEDKEMTDDPS

A0A5A7SSX4 Nuclear pore complex protein NUP54

1.6e-48

90.08

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPV+KGEAELAEKL+LITRQ K SGAELS+RVQNLL ITRGQ NGSG GNSIYLQGSAKIHEQSLA+MQEVLQQQTEAIARLG VLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAEDKEM DD S
Subjt:  RDVRDMEIIMAEDKEMTDDPS

A0A6J1DDY9 nuclear pore complex protein NUP54

7.2e-49

90.91

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKL+LITRQ K SGAELSRRVQNLL  TRGQ NGS +GNSIYLQGSAKIHEQSLA+MQEVLQQQTEAIARLG VLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAEDKEMTDD S
Subjt:  RDVRDMEIIMAEDKEMTDDPS

A0A6J1H0M2 nuclear pore complex protein NUP54-like

1.8e-55

99.17

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLA+MQEVLQQQTEAIARLGTVLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDMEIIMAEDKEMTDDPS
Subjt:  RDVRDMEIIMAEDKEMTDDPS

A0A6J1KFN7 nuclear pore complex protein NUP54-like

5.1e-55

98.35

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLA+MQEVLQQQTEAIARLGTVLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDDPS
        RDVRDM+IIMAEDKEMTDDPS
Subjt:  RDVRDMEIIMAEDKEMTDDPS

SwissProt top hits

e value

%identity

Alignment

Q8GYF7 Nuclear pore complex protein NUP54

9.7e-35

68.07

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRI+E LE KG R+P+ KGEAEL+EKL+ ITRQ K  GAELSRRVQ+L  I+R Q N   AG+S+YL GS KI EQSL +MQEVLQQ+TEAI RLG VLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDD
        RD+RDMEI++AED EM  D
Subjt:  RDVRDMEIIMAEDKEMTDD

Arabidopsis top hits

e value

%identity

Alignment

AT1G24310.1 unknown protein

6.9e-36

68.07

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Query:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK
        MRI+E LE KG R+P+ KGEAEL+EKL+ ITRQ K  GAELSRRVQ+L  I+R Q N   AG+S+YL GS KI EQSL +MQEVLQQ+TEAI RLG VLK
Subjt:  MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLK

Query:  RDVRDMEIIMAEDKEMTDD
        RD+RDMEI++AED EM  D
Subjt:  RDVRDMEIIMAEDKEMTDD

Sequences

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CDS sequence

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ATGAGAATTGTGGAGGCACTAGAAAGTAAGGGTTGCCGAGTGCCTGTAATGAAAGGAGAGGCTGAATTGGCAGAGAAGTTAAGTTTGATAACGAGGCAGTTCAAAGAATC
TGGGGCAGAGCTTTCAAGAAGGGTGCAAAATTTGCTTATGATTACTCGTGGCCAACCAAATGGCTCCGGTGCTGGTAATTCCATCTATCTTCAAGGATCTGCAAAAATAC
ACGAACAGAGTCTTGCTGAAATGCAGGAGGTTTTGCAGCAGCAGACGGAGGCCATTGCTAGACTTGGAACTGTGTTAAAGCGAGACGTTAGAGACATGGAAATCATAATG
GCTGAAGACAAAGAGATGACAGATGATCCGAGTTAA

mRNA sequence

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Protein sequence

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MRIVEALESKGCRVPVMKGEAELAEKLSLITRQFKESGAELSRRVQNLLMITRGQPNGSGAGNSIYLQGSAKIHEQSLAEMQEVLQQQTEAIARLGTVLKRDVRDMEIIM
AEDKEMTDDPS

Carg14263 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome