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Carg14286 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14286
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr04:10553767..10555025
RNA-Seq ExpressionCarg14286
SyntenyCarg14286
Gene Ontology termsGO:0016567 - protein ubiquitination (biological process)
GO:0061630 - ubiquitin protein ligase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601571.1 E3 ubiquitin-protein ligase AIRP2, partial [Cucurbita argyrosperma subsp. sororia]5.8e-3169.44Show/hide
Query:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSVLSSWKEKQCGNNSPKGTRLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEW
        EGRSDLETMQSPTKKQWINTKHKMSGHGLST+ISLLFSTSSGCCSVLSSWKEK+CGNNSPKGTRLKNL+ +    Y    +QM  Q     +  L  + W
Subjt:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSVLSSWKEKQCGNNSPKGTRLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEW

Query:  --MDFSCT
            +SCT
Subjt:  --MDFSCT

KAG7032335.1 hypothetical protein SDJN02_06380 [Cucurbita argyrosperma subsp. argyrosperma]8.8e-80100Show/hide
Query:  MGGMKRRDQSWEGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSVLSSWKEKQCGNNSPKGTRLKNLAAMFSRDYGGFCIQMRLQYSP
        MGGMKRRDQSWEGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSVLSSWKEKQCGNNSPKGTRLKNLAAMFSRDYGGFCIQMRLQYSP
Subjt:  MGGMKRRDQSWEGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSVLSSWKEKQCGNNSPKGTRLKNLAAMFSRDYGGFCIQMRLQYSP

Query:  FALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKVLPSTLAAYSQPEI
        FALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKVLPSTLAAYSQPEI
Subjt:  FALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKVLPSTLAAYSQPEI

XP_022956579.1 uncharacterized protein LOC111458275 [Cucurbita moschata]3.6e-2595Show/hide
Query:  RLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        R   LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
Subjt:  RLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

XP_022998292.1 uncharacterized protein LOC111492969 isoform X1 [Cucurbita maxima]5.8e-3967.39Show/hide
Query:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL
        EG+SDLETMQSPTKKQWINTK KMSGHGLST+ISLL        CSV    + ++     PK    K               LAAMFSR+YGGFCIQMRL
Subjt:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL

Query:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFH+LLYKV
Subjt:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

XP_022998299.1 uncharacterized protein LOC111492969 isoform X2 [Cucurbita maxima]5.8e-3967.39Show/hide
Query:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL
        EG+SDLETMQSPTKKQWINTK KMSGHGLST+ISLL        CSV    + ++     PK    K               LAAMFSR+YGGFCIQMRL
Subjt:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL

Query:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFH+LLYKV
Subjt:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

TrEMBL top hitse value%identityAlignment
A0A1S3BDT3 peroxisome biogenesis factor 10-like isoform X11.0e-2085.71Show/hide
Query:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        LAAM  R+YGGFCIQMRL YSPFA F LHWIEWMDF+CTDP+PSFLGLFHILLYKV
Subjt:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

A0A5A7SXP9 Peroxisome biogenesis factor 10-like isoform X11.0e-2085.71Show/hide
Query:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        LAAM  R+YGGFCIQMRL YSPFA F LHWIEWMDF+CTDP+PSFLGLFHILLYKV
Subjt:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

A0A6J1GWY5 uncharacterized protein LOC1114582751.8e-2595Show/hide
Query:  RLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        R   LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
Subjt:  RLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

A0A6J1K7J3 uncharacterized protein LOC111492969 isoform X12.8e-3967.39Show/hide
Query:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL
        EG+SDLETMQSPTKKQWINTK KMSGHGLST+ISLL        CSV    + ++     PK    K               LAAMFSR+YGGFCIQMRL
Subjt:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL

Query:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFH+LLYKV
Subjt:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

A0A6J1KDZ0 uncharacterized protein LOC111492969 isoform X22.8e-3967.39Show/hide
Query:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL
        EG+SDLETMQSPTKKQWINTK KMSGHGLST+ISLL        CSV    + ++     PK    K               LAAMFSR+YGGFCIQMRL
Subjt:  EGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTS-SGCCSVLSSWKEKQCGNNSPKGTRLKN--------------LAAMFSRDYGGFCIQMRL

Query:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFH+LLYKV
Subjt:  QYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G13195.1 RING/U-box superfamily protein1.3e-0444.19Show/hide
Query:  IQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        +QM+L +S FA   L  + W+D S +  +P +L LFH+L+YKV
Subjt:  IQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

AT1G13195.2 RING/U-box superfamily protein1.3e-0444.19Show/hide
Query:  IQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        +QM+L +S FA   L  + W+D S +  +P +L LFH+L+YKV
Subjt:  IQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

AT1G24440.1 RING/U-box superfamily protein2.4e-0646.43Show/hide
Query:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV
        LAA       G  +QM+L  S  A FF+  ++WMDFSC   LP +   FHIL+YKV
Subjt:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLYKV

AT5G58787.1 RING/U-box superfamily protein7.6e-0544.44Show/hide
Query:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLY
        LA  + R+  G  +QMRL YSP A FFL  ++W D      L  FLGL  +L+Y
Subjt:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLY

AT5G58787.2 RING/U-box superfamily protein7.6e-0544.44Show/hide
Query:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLY
        LA  + R+  G  +QMRL YSP A FFL  ++W D      L  FLGL  +L+Y
Subjt:  LAAMFSRDYGGFCIQMRLQYSPFALFFLHWIEWMDFSCTDPLPSFLGLFHILLY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGCGGAATGAAGCGGCGCGATCAAAGTTGGGAAGGAAGGTCTGACTTGGAAACGATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAACACAAGATGTCTGG
ACACGGCCTTTCCACAAGTATATCTCTTCTTTTCTCAACATCATCTGGCTGCTGCTCTGTTCTGTCGAGTTGGAAGGAGAAACAATGTGGCAACAACAGCCCAAAAGGAA
CTCGTTTAAAGAATCTGGCAGCTATGTTCTCGAGAGATTACGGTGGATTTTGCATTCAAATGAGATTGCAATACAGCCCATTTGCTCTCTTTTTTCTCCATTGGATTGAA
TGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGCTTCCCTCAACTCTTGCAGCATATTCACAACCTGAAAT
CTAA
mRNA sequenceShow/hide mRNA sequence
ATTATTTTTTTTAAAAAAATAATTTTGATTTGAAAACTTGCTAATGGGCCTTGGTCCAAAGCAACCTTGAGAGCCTCTAAATGAAACGGACTCGGGCTGAAGAAGGGAGG
TGACCTAATCGTCCGGATCTTACATTTTTCTGCCAATCTCTGTCTAAGCTCCGATGAACGAACATGGAGGAACCCATCGGAGAGAGACAGAAATGCCGATATCAGAATTG
GTGAGGGACAGACGATGGGCGGAATGAAGCGGCGCGATCAAAGTTGGGAAGGAAGGTCTGACTTGGAAACGATGCAATCCCCGACTAAGAAACAATGGATAAACACTAAA
CACAAGATGTCTGGACACGGCCTTTCCACAAGTATATCTCTTCTTTTCTCAACATCATCTGGCTGCTGCTCTGTTCTGTCGAGTTGGAAGGAGAAACAATGTGGCAACAA
CAGCCCAAAAGGAACTCGTTTAAAGAATCTGGCAGCTATGTTCTCGAGAGATTACGGTGGATTTTGCATTCAAATGAGATTGCAATACAGCCCATTTGCTCTCTTTTTTC
TCCATTGGATTGAATGGATGGATTTCAGTTGCACAGATCCTCTTCCAAGTTTCTTGGGCCTTTTCCACATACTCTTGTACAAGGTGCTTCCCTCAACTCTTGCAGCATAT
TCACAACCTGAAATCTAA
Protein sequenceShow/hide protein sequence
MGGMKRRDQSWEGRSDLETMQSPTKKQWINTKHKMSGHGLSTSISLLFSTSSGCCSVLSSWKEKQCGNNSPKGTRLKNLAAMFSRDYGGFCIQMRLQYSPFALFFLHWIE
WMDFSCTDPLPSFLGLFHILLYKVLPSTLAAYSQPEI