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Carg14290 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14290
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionAvrRpt-cleavage domain-containing protein
Genome locationCarg_Chr04:10529611..10530055
RNA-Seq ExpressionCarg14290
SyntenyCarg14290
Gene Ontology termsNA
InterPro domainsIPR008700 - RIN4, pathogenic type III effector avirulence factor Avr cleavage site
IPR040387 - RPM1-interacting protein 4/NOI4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601569.1 hypothetical protein SDJN03_06802, partial [Cucurbita argyrosperma subsp. sororia]1.3e-29100Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHCCF
        AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHCCF
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHCCF

KAG7032331.1 hypothetical protein SDJN02_06376, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-29100Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHCCF
        AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHCCF
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHCCF

XP_008446098.1 PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]4.9e-0851.32Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPR-------------------RKQKGW
        AQKG  L KFG+WDEK+PA AEG TVIFNRAR N K  G  GTP N+  P+                   RKQKGW
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPR-------------------RKQKGW

XP_022998621.1 uncharacterized protein LOC111493198 isoform X2 [Cucurbita maxima]2.0e-1493.18Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTN
        AQKGNSLSKFGEWDEK+PAPAEGI VIFNRARVNSKKEGGTPT+
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTN

XP_038892913.1 protein NOI4-like isoform X1 [Benincasa hispida]5.8e-0949.41Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPT-NMKLPR-----------------------RKQKGWHWHCCF
        A KG  L KFGEWDEK+PA AEG TVIF+RAR N K  GGT T N  +P+                       RKQKG  WHCCF
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPT-NMKLPR-----------------------RKQKGWHWHCCF

TrEMBL top hitse value%identityAlignment
A0A0A0KTF9 AvrRpt-cleavage domain-containing protein5.3e-0850.67Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPR------------------RKQKGW
        AQKG  L KFG+WDE++PA AEG TVIFNRAR N K  G  GTP N+  P+                  RKQKGW
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPR------------------RKQKGW

A0A1S3BEY0 RPM1-interacting protein 4-like2.4e-0851.32Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPR-------------------RKQKGW
        AQKG  L KFG+WDEK+PA AEG TVIFNRAR N K  G  GTP N+  P+                   RKQKGW
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPR-------------------RKQKGW

A0A5D3CUX8 RPM1-interacting protein 4-like9.0e-0862.26Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPRRK
        AQKG  L KFG+WDEK+PA AEG TVIFNRAR N K  G  GTP N+  P+ +
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEG--GTPTNMKLPRRK

A0A6J1G0L7 RPM1-interacting protein 4-like4.0e-0863.46Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQ
        A +G+SL KFGEWDEK PA AEG TVIF+RAR ++KK GGTP N+ +P+  Q
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQ

A0A6J1KAM8 uncharacterized protein LOC111493198 isoform X29.9e-1593.18Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTN
        AQKGNSLSKFGEWDEK+PAPAEGI VIFNRARVNSKKEGGTPT+
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTN

SwissProt top hitse value%identityAlignment
O22633 Protein NOI49.6e-0761.9Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP
        + KG  L KFGEWD   PA AEG TVIFN+AR + KK GG P
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP

Arabidopsis top hitse value%identityAlignment
AT2G04410.1 RPM1-interacting protein 4 (RIN4) family protein5.2e-0843.06Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWH------------WHCC
        A KG  L KFGEWD   P+ AEG TVIFN+AR N KK GG   +   P + + G++            W CC
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWH------------WHCC

AT5G55850.1 RPM1-interacting protein 4 (RIN4) family protein6.8e-0861.9Show/hide
Query:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP
        + KG  L KFGEWD   PA AEG TVIFN+AR + KK GG P
Subjt:  AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP

AT5G55850.2 RPM1-interacting protein 4 (RIN4) family protein8.9e-0865Show/hide
Query:  KGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP
        KG  L KFGEWD   PA AEG TVIFN+AR + KK GG P
Subjt:  KGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP

AT5G55850.3 RPM1-interacting protein 4 (RIN4) family protein8.9e-0865Show/hide
Query:  KGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP
        KG  L KFGEWD   PA AEG TVIFN+AR + KK GG P
Subjt:  KGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTP

AT5G63270.1 RPM1-interacting protein 4 (RIN4) family protein4.4e-0747.17Show/hide
Query:  KGNSLSKFGEWDEKHPAPAEGITVIFNRA---RVNSKKEGGTPTNMKLPRRKQ
        KG  L KFGEWD  +PA AEG TVIF++A   +   K  G  P ++  P+R Q
Subjt:  KGNSLSKFGEWDEKHPAPAEGITVIFNRA---RVNSKKEGGTPTNMKLPRRKQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
GCTCAGAAGGGTAATTCTCTGTCCAAATTTGGTGAGTGGGATGAAAAACATCCTGCTCCAGCTGAAGGGATCACAGTGATCTTCAACAGGGCACGAGTTAATAGTAAGAA
AGAAGGAGGAACTCCAACAAATATGAAGCTGCCAAGAAGAAAGCAGAAAGGATGGCATTGGCATTGCTGCTTTTAG
mRNA sequenceShow/hide mRNA sequence
GCTCAGAAGGGTAATTCTCTGTCCAAATTTGGTGAGTGGGATGAAAAACATCCTGCTCCAGCTGAAGGGATCACAGTGATCTTCAACAGGGCACGAGTTAATAGTAAGAA
AGAAGGAGGAACTCCAACAAATATGAAGCTGCCAAGAAGAAAGCAGAAAGGATGGCATTGGCATTGCTGCTTTTAGTAGCCTTTTTTGTAACTCTGAATGAACAAAATTC
TGCTGTTTGTGGGGGCTTTTTGAGTGCAGAGATTGATTGATGCTGTAGATGCAGCTTCTTGTGTATATGTTTTGGAAATTTTTTGATGGCTTTTCCTTCTGTTCATTACG
ACAAGCTTCTTGGGTTGCCTCC
Protein sequenceShow/hide protein sequence
AQKGNSLSKFGEWDEKHPAPAEGITVIFNRARVNSKKEGGTPTNMKLPRRKQKGWHWHCCF