CuGenDBv2

Gene ID	Carg14295
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	photosystem II core complex proteins psbY, chloroplastic-like
Genome location	Carg_Chr04:10512908..10513444
RNA-Seq Expression	Carg14295
Synteny	Carg14295
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0045454 - cell redox homeostasis (biological process) GO:0009523 - photosystem II (cellular component) GO:0009534 - chloroplast thylakoid (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030145 - manganese ion binding (molecular function)
InterPro domains	IPR009388 - Photosystem II PsbY IPR038760 - Photosystem II PsbY, plant

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7032326.1 Photosystem II core complex proteins psbY, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]

6.9e-87

100

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_008446112.1 PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Cucumis melo]

1.4e-74

89.94

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGL+GTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022956891.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita moschata]

5.9e-86

98.88

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPP LLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_022998705.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita maxima]

4.2e-84

97.75

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP  LLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

XP_023511769.1 photosystem II core complex proteins psbY, chloroplastic-like [Cucurbita pepo subsp. pepo]

6.5e-85

97.19

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPP LLPSKPTTP+SLP+PSPKSSLAGSAIAGAIFST SFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KTG2 Uncharacterized protein

2.8e-70

87.29

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Query:  MAATMATMAILNAKCFTP-NRTPPSLLPSKPTT-PISLPIP-SPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
        MAATMATMAILNAKCFTP N+TP  LLPSKP T PISLP+P   K SLAG+AIAGAIFST S  DAA AAQQIADLAEGDNRGLALLLPLIPAVAWVLFN
Subjt:  MAATMATMAILNAKCFTP-NRTPPSLLPSKPTT-PISLPIP-SPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFN

Query:  ILQPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        ILQPALNQINRMRTEKAVI GLGLGGLLASGL+GTPEAMAAEA +D RGQLLLIVVAPAI WVL+NILQPALNQLNRMRSE
Subjt:  ILQPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A1S3BDT7 photosystem II core complex proteins psbY, chloroplastic-like

6.5e-75

89.94

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGL+GTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A5A7SY80 Photosystem II core complex proteins psbY

6.5e-75

89.94

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
        MAATMATMAILNAKCFTP    P LLPSKPT PISLP P P K SLAG+AIAGAIFST S  DAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSP-KSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNIL

Query:  QPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        QPALNQINRMRTEKAVI GLGLGGLLASGL+GTPEAMAAEASND+RGQLLLIVVAPAI WVLYNILQPALNQLNRMRSE
Subjt:  QPALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1GXR1 photosystem II core complex proteins psbY, chloroplastic-like

2.8e-86

98.88

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTPP LLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

A0A6J1KD85 photosystem II core complex proteins psbY, chloroplastic-like

2.0e-84

97.75

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
        MAATMATMAILNAKCFTPNRTP  LLPSKPT PISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQ

Query:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        PALNQINRMRTEKAVIAGLGLGGLLASGL+GTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
Subjt:  PALNQINRMRTEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

SwissProt top hits

e value

%identity

Alignment

O49347 Photosystem II core complex proteins psbY, chloroplastic

1.5e-44

58.64

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Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +PP L     + P ISLP  P P  SLA   +A+AGA+FS+ S+++ A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLLGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++ GLG+ GGL ASGLL  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLLGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

P80470 Photosystem II core complex proteins psbY, chloroplastic

9.8e-44

59.8

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Query:  MAATMA-TMAILNAKCFTPNRTPPSLLPSKPTT-PISL-PIPSPKSSL--------AGSAIAGAIFSTFSFTDAAFAAQQIADLA----EGDNRGLALLL
        MAATMA TMA+LN KC T N    +    KPT+ PISL P+    S L           AIAGA+F+T    D AFA QQ+AD+A      DNRGLALLL
Subjt:  MAATMA-TMAILNAKCFTPNRTPPSLLPSKPTT-PISL-PIPSPKSSL--------AGSAIAGAIFSTFSFTDAAFAAQQIADLA----EGDNRGLALLL

Query:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIAGLGLGGLLASG-LLGTPEAMAAE----ASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE
        P+IPA+ WVLFNILQPALNQIN+MR E KA I GLGL GL  SG LL TPEA AA       +D RG LLL+VV PAI WVL+NILQPALNQLN+MRS+
Subjt:  PLIPAVAWVLFNILQPALNQINRMRTE-KAVIAGLGLGGLLASG-LLGTPEAMAAE----ASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Arabidopsis top hits

e value

%identity

Alignment

AT1G67740.1 photosystem II BY

1.1e-45

58.64

Show/hide

Query:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA
        MAA MAT      KC + N +PP L     + P ISLP  P P  SLA   +A+AGA+FS+ S+++ A A QQIA L    A  DNRGLALLLP++PA+A
Subjt:  MAATMATMAILNAKCFTPNRTPPSLLPSKPTTP-ISLPI-PSPKSSLA--GSAIAGAIFSTFSFTDAAFAAQQIADL----AEGDNRGLALLLPLIPAVA

Query:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLLGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS
        WVL+NILQPA+NQ+N+MR  K ++ GLG+ GGL ASGLL  P      A AA AS+D+RGQLLLIVV PA+LWVLYNILQPALNQ+N+MRS
Subjt:  WVLFNILQPALNQINRMRTEKAVIAGLGL-GGLLASGLLGTP-----EAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRS

Sequences

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CDS sequence

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ATGGCGGCAACAATGGCGACCATGGCGATCCTCAACGCCAAATGCTTCACCCCCAACAGAACCCCCCCATCACTCCTTCCCTCAAAGCCCACAACACCCATCTCCCTCCC
AATCCCCTCACCCAAATCTTCCCTCGCTGGATCCGCCATTGCCGGCGCCATCTTCTCCACTTTCAGCTTCACCGACGCCGCCTTCGCCGCCCAACAAATCGCCGATCTAG
CCGAGGGCGACAACCGTGGGCTGGCTCTGTTGCTGCCGCTCATCCCGGCTGTGGCTTGGGTTCTCTTCAATATTCTTCAGCCAGCGCTGAATCAGATCAACCGGATGCGG
ACTGAGAAGGCGGTGATTGCCGGATTGGGTCTCGGCGGGCTGTTGGCCTCTGGGCTGCTGGGGACGCCGGAGGCAATGGCGGCGGAGGCTTCCAACGACGCGAGAGGACA
GCTGCTGCTGATTGTGGTGGCGCCGGCGATTCTGTGGGTTCTGTACAATATTCTTCAGCCGGCGTTGAACCAGCTGAATCGGATGAGGTCGGAGTGA

mRNA sequence

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Protein sequence

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MAATMATMAILNAKCFTPNRTPPSLLPSKPTTPISLPIPSPKSSLAGSAIAGAIFSTFSFTDAAFAAQQIADLAEGDNRGLALLLPLIPAVAWVLFNILQPALNQINRMR
TEKAVIAGLGLGGLLASGLLGTPEAMAAEASNDARGQLLLIVVAPAILWVLYNILQPALNQLNRMRSE

Carg14295 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome