CuGenDBv2

Gene ID	Carg14337
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	transcription factor ABORTED MICROSPORES
Genome location	Carg_Chr04:10115332..10115710
RNA-Seq Expression	Carg14337
Synteny	Carg14337
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR025610 - Transcription factor MYC/MYB N-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6601503.1 Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia]

1.0e-49

100

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

KAG7032285.1 Transcription factor bHLH90, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-49

100

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

XP_022957495.1 transcription factor ABORTED MICROSPORES [Cucurbita moschata]

1.1e-48

98.94

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCS GSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

XP_022971461.1 transcription factor ABORTED MICROSPORES [Cucurbita maxima]

1.1e-48

97.87

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPA LCKDTRF+HFRRTNACQALAQFPSTISLNSG
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

XP_023543399.1 transcription factor ABORTED MICROSPORES [Cucurbita pepo subsp. pepo]

2.0e-48

97.87

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFD GGKREAGETIPA LCKDTRFRHFRRTNACQALAQFPSTISLNSG
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BFB9 transcription factor ABORTED MICROSPORES

1.2e-40

85.26

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSS-RFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MR FEGALE LR LVE K+WDYCIVW+SRDD S RFIDWVGCCCSGG  DAGGK EAGETIPA LCKDTRFRHFRRTNACQALAQFPS+ISLN+G
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSS-RFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

A0A5D3CUN7 Transcription factor ABORTED MICROSPORES

1.2e-40

85.26

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSS-RFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MR FEGALE LR LVE K+WDYCIVW+SRDD S RFIDWVGCCCSGG  DAGGK EAGETIPA LCKDTRFRHFRRTNACQALAQFPS+ISLN+G
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSS-RFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

A0A6J1H0Q3 transcription factor ABORTED MICROSPORES

5.6e-49

98.94

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCS GSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

A0A6J1I3E2 transcription factor ABORTED MICROSPORES

5.6e-49

97.87

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPA LCKDTRF+HFRRTNACQALAQFPSTISLNSG
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

E5GBJ2 BHLH transcription factor

1.2e-40

85.26

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSS-RFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MR FEGALE LR LVE K+WDYCIVW+SRDD S RFIDWVGCCCSGG  DAGGK EAGETIPA LCKDTRFRHFRRTNACQALAQFPS+ISLN+G
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSS-RFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

SwissProt top hits

e value

%identity

Alignment

Q0WNR2 Transcription factor bHLH90

4.9e-18

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKRE------AGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRG E   E LR  V+++ WD C++W+  DD SRFI+WVGCCCSG   D   K E       G    A  C+D   +H  RT AC+AL++FP  + L  G
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKRE------AGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

Q9ZVX2 Transcription factor ABORTED MICROSPORES

3.6e-13

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Query:  EGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        +  LE LR LV  + WDYC++WR  +D  RF+ W+GCCC G    A       E      C+D  F H  RT +C+ L+  P++I L+SG
Subjt:  EGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

Arabidopsis top hits

e value

%identity

Alignment

AT1G10610.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

3.5e-19

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Query:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKRE------AGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        MRG E   E LR  V+++ WD C++W+  DD SRFI+WVGCCCSG   D   K E       G    A  C+D   +H  RT AC+AL++FP  + L  G
Subjt:  MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKRE------AGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

AT2G16910.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

2.6e-14

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Query:  EGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG
        +  LE LR LV  + WDYC++WR  +D  RF+ W+GCCC G    A       E      C+D  F H  RT +C+ L+  P++I L+SG
Subjt:  EGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

Sequences

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CDS sequence

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ATGAGAGGCTTTGAGGGAGCTCTGGAGTGTCTTAGGGCTCTTGTGGAGACCAAAGTTTGGGATTATTGCATTGTTTGGAGATCGAGGGATGATTCTTCCAGGTTCATTGA
TTGGGTAGGTTGCTGCTGTAGCGGTGGAAGTTTCGACGCCGGTGGGAAAAGGGAAGCCGGTGAGACAATCCCAGCTATTCTTTGTAAGGACACTCGATTTCGACATTTTA
GGAGAACAAATGCTTGCCAAGCACTTGCTCAGTTCCCTTCTACTATATCATTGAACTCTGGGTAG

mRNA sequence

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Protein sequence

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MRGFEGALECLRALVETKVWDYCIVWRSRDDSSRFIDWVGCCCSGGSFDAGGKREAGETIPAILCKDTRFRHFRRTNACQALAQFPSTISLNSG

Carg14337 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome