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Carg14355 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14355
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionserine/arginine-rich splicing factor RSZ21-like isoform X2
Genome locationCarg_Chr04:10045319..10046997
RNA-Seq ExpressionCarg14355
SyntenyCarg14355
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032267.1 hypothetical protein SDJN02_06311, partial [Cucurbita argyrosperma subsp. argyrosperma]3.2e-44100Show/hide
Query:  MNVVNLVILLVSVVHVGAHEVQEVVCAVVLLLGAVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKAGCCA
        MNVVNLVILLVSVVHVGAHEVQEVVCAVVLLLGAVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKAGCCA
Subjt:  MNVVNLVILLVSVVHVGAHEVQEVVCAVVLLLGAVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKAGCCA

Query:  GRT
        GRT
Subjt:  GRT

XP_022966889.1 serine/arginine-rich splicing factor RSZ21-like isoform X1 [Cucurbita maxima]4.2e-1276.19Show/hide
Query:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA
        A GVQ MKDMVAGV VLVVKD H DVAALHLLSVVG TAD LH  ML V HLML EID G++A
Subjt:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA

XP_022966891.1 serine/arginine-rich splicing factor RSZ21-like isoform X2 [Cucurbita maxima]4.2e-1276.19Show/hide
Query:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA
        A GVQ MKDMVAGV VLVVKD H DVAALHLLSVVG TAD LH  ML V HLML EID G++A
Subjt:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA

TrEMBL top hitse value%identityAlignment
A0A6J1HQJ9 serine/arginine-rich splicing factor RSZ21-like isoform X22.0e-1276.19Show/hide
Query:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA
        A GVQ MKDMVAGV VLVVKD H DVAALHLLSVVG TAD LH  ML V HLML EID G++A
Subjt:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA

A0A6J1HV42 serine/arginine-rich splicing factor RSZ21-like isoform X12.0e-1276.19Show/hide
Query:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA
        A GVQ MKDMVAGV VLVVKD H DVAALHLLSVVG TAD LH  ML V HLML EID G++A
Subjt:  AVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGTAGGAGT
CCAAGCTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATC
CCCTCCACCCCGCCATGCTCGTCGTGCTTCACCTTATGCTAATGGAGATTGATGTTGGACTCAAGGCTGGATGCTGTGCTGGTAGAACTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATGTGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGTTCACGTGGGGGCTCACGAGGTGCAGGAGGTGGTTTGCGCCGTAGTCCTTCTCCTCGGCGCCGTAGGAGT
CCAAGCTATGAAAGATATGGTCGCAGGAGTAACAGTCCTCGTGGTAAAAGATCCCCACCAAGACGTCGCAGCATTACACCTCCTAAGCGTGGTCGGAGCTACAGCAGATC
CCCTCCACCCCGCCATGCTCGTCGTGCTTCACCTTATGCTAATGGAGATTGATGTTGGACTCAAGGCTGGATGCTGTGCTGGTAGAACTTAGATGATGGTGTTTCTGCTA
TGCTGTAGTTCTAATAGGAATTGTGGAGTGAACCAGAATCATGTAGTTAAGTTCGTCTCTGACAATTGGTTCTCTTTGAAACCTGGATTTGGATGGGTGTCTACGAAGTG
TTTTGAGCCACGAAATGGGGTTTGGTCGGGCACCATTTTGTGTTGGCTCCCTTCTGCCCGCTGAAACTCGGAGGTCTCTTTCTTGCTTTTAAAATTATATCTACTACCTA
GAGTTTTATATATATATATCTATATACCTTTCTATCTATTCATCAATATTTCTTTTTCATTGGATGCCCCTAAAGATCTATCTGTTGGCTGTTTTTTCCTCTTATGTTTT
TGAGGTGTGATTTTCGGCTATATATGGCATCGTTACTCAGCTAACTGCATCTTAGTGCATCACGGTTCTCAATATCTGCTCTGCTCCTCAATCATCTTCTTGTTACTACA
ACTGGTTGCATGCTGTTTGTATTGCACTCAAGGCTGCCCATATAGTGTTAATCCTTTTTAGGTGGTTGAAGAAGATGAAGCTGTTTTTATGCGATTTTTCTGCTCATCAT
CTTCTCCTTCTTCTATTACATCTGCAAAACTATTGTGAGCGTTTTATAACATCGGCATCTTGTGAGCTTCAACTTGTTTATTGCTCTCCCCAACTACTGCCTTGCCTTGC
TCCACCAACCTTCCCTCTTTCACCATTATGCTTCCTTCAATAGCACTTCTCCTTAAGTGAGGCAGCTACTTTCTTGGTCATGGCTCATTAGTTTGTGTGTATTAGCTAGC
TAGCTAGGGTCAAGGATGTTGGAAATTTGAATGCTTATTTATATTCCCACTCTTTGATGTTTGTTGTTTGTTCTTTGC
Protein sequenceShow/hide protein sequence
MNVVNLVILLVSVVHVGAHEVQEVVCAVVLLLGAVGVQAMKDMVAGVTVLVVKDPHQDVAALHLLSVVGATADPLHPAMLVVLHLMLMEIDVGLKAGCCAGRT