; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg14356 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14356
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionserine/arginine-rich splicing factor RSZ21-like
Genome locationCarg_Chr04:10042770..10045304
RNA-Seq ExpressionCarg14356
SyntenyCarg14356
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032266.1 Serine/arginine-rich splicing factor RSZ21, partial [Cucurbita argyrosperma subsp. argyrosperma]2.1e-73100Show/hide
Query:  MAAIIFINNQETKLTYHLTDNFCRLPSIGAPRLRAAPNDSFSQTNIELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFD
        MAAIIFINNQETKLTYHLTDNFCRLPSIGAPRLRAAPNDSFSQTNIELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFD
Subjt:  MAAIIFINNQETKLTYHLTDNFCRLPSIGAPRLRAAPNDSFSQTNIELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFD

Query:  DRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        DRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
Subjt:  DRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

XP_011655636.1 serine/arginine-rich splicing factor RSZ21 [Cucumis sativus]1.9e-3997.78Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRGGGGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

XP_022151054.1 serine/arginine-rich splicing factor RSZ21 [Momordica charantia]5.7e-3997.7Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGG
        MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHN+KGSGGGGGRRGRGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGG

XP_022956661.1 serine/arginine-rich splicing factor RSZ21-like [Cucurbita moschata]8.7e-4098.89Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRGGGGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

XP_023004543.1 serine/arginine-rich splicing factor RSZ21-like [Cucurbita maxima]8.7e-4098.89Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRGGGGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

TrEMBL top hitse value%identityAlignment
A0A0A0KTR0 RRM domain-containing protein1.4e-4670.51Show/hide
Query:  HLTDNFCRLPSIGAPRLR------------------AAPND----------SFSQTNIELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVA
        HLT  FCRLPSIGA RLR                  + P D          +F+     +L SF TMTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVA
Subjt:  HLTDNFCRLPSIGAPRLR------------------AAPND----------SFSQTNIELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVA

Query:  RRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        RRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRGGGGGG
Subjt:  RRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

A0A1S3BEJ4 serine/arginine-rich splicing factor RSZ214.7e-3996.67Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRG GGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

A0A6J1DBV4 serine/arginine-rich splicing factor RSZ212.7e-3997.7Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGG
        MTRVYIGNLDPRVTER+LEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHN+KGSGGGGGRRGRGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGG

A0A6J1GX57 serine/arginine-rich splicing factor RSZ21-like4.2e-4098.89Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRGGGGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

A0A6J1KZV2 serine/arginine-rich splicing factor RSZ21-like4.2e-4098.89Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKG GGGGGRRGRGGGGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

SwissProt top hitse value%identityAlignment
O81126 Serine/arginine-rich splicing factor RSZ225.3e-3281.32Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG-RGGGGGG
        M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDGKNGWRVE SHN +G  GGGGR G RGGGGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG-RGGGGGG

O81127 Serine/arginine-rich splicing factor RSZ212.0e-3485.71Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG
        MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KG  GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG

Q69KL9 Serine/arginine-rich splicing factor RSZ21A1.1e-2975.9Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG
        M RVY+GNLDPRVT RELEDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ +DGKNGWRVELS N+    GG  R G
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG

Q6K9C3 Serine/arginine-rich splicing factor RSZ231.6e-2877.11Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG
        M RVY+GNLDPRVT RE+EDEFR+FGVLRSVWVAR+PPG+AFI+FDDRRDA DAI+ LDGKNGWRVELS    GSG G  R G
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG

Q9SJA6 Serine/arginine-rich splicing factor RSZ22A5.9e-3176.67Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG
        M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ +DGKNGWRVE SHN  G GG GG RG G GG G
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG

Arabidopsis top hitse value%identityAlignment
AT1G23860.1 RS-containing zinc finger protein 211.4e-3585.71Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG
        MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KG  GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG

AT1G23860.2 RS-containing zinc finger protein 211.4e-3585.71Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG
        MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KG  GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG

AT1G23860.3 RS-containing zinc finger protein 211.4e-3585.71Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG
        MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KG  GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG

AT1G23860.4 RS-containing zinc finger protein 211.4e-3585.71Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG
        MTRVY+GNLDPRVTERELEDEF+ FGVLR+VWVARRPPGYAF+EFDD RDALDAI ALD KNGWRVELSH  KG  GGGGGRRG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGS-GGGGGRRG

AT4G31580.1 serine/arginine-rich 223.8e-3381.32Show/hide
Query:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG-RGGGGGG
        M+RVY+GNLDPRVTERELEDEFR FGV+RSVWVARRPPGYAF++F+D RDA DAI+ALDGKNGWRVE SHN +G  GGGGR G RGGGGGG
Subjt:  MTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQALDGKNGWRVELSHNSKGSGGGGGRRG-RGGGGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCATCATATTCATCAACAACCAGGAAACAAAACTCACATATCACTTGACTGACAACTTCTGTAGACTTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACC
GAATGATTCGTTTTCTCAAACTAACATAGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAG
ATGAATTTCGAATGTTCGGTGTTCTGAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAA
GCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCAGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCATCATATTCATCAACAACCAGGAAACAAAACTCACATATCACTTGACTGACAACTTCTGTAGACTTCCGAGCATCGGAGCTCCGCGACTACGGGCAGCACC
GAATGATTCGTTTTCTCAAACTAACATAGAGCTTCTGGGCTCCTTCGATACAATGACTCGAGTTTACATTGGTAATCTGGATCCACGTGTTACGGAGAGGGAGCTTGAAG
ATGAATTTCGAATGTTCGGTGTTCTGAGGAGTGTTTGGGTTGCTAGAAGGCCTCCAGGATATGCATTTATTGAGTTTGATGATCGCAGGGATGCTCTAGATGCAATACAA
GCATTGGATGGGAAAAATGGTTGGCGTGTGGAGCTTTCTCACAACTCTAAAGGCAGTGGAGGAGGTGGTGGTCGTCGTGGCCGTGGTGGTGGTGGTGGTGGGTGA
Protein sequenceShow/hide protein sequence
MAAIIFINNQETKLTYHLTDNFCRLPSIGAPRLRAAPNDSFSQTNIELLGSFDTMTRVYIGNLDPRVTERELEDEFRMFGVLRSVWVARRPPGYAFIEFDDRRDALDAIQ
ALDGKNGWRVELSHNSKGSGGGGGRRGRGGGGGG