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Carg14404 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14404
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description50S ribosomal protein L18
Genome locationCarg_Chr04:9773006..9774415
RNA-Seq ExpressionCarg14404
SyntenyCarg14404
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7032219.1 50S ribosomal protein L18, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]4.9e-63100Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAISGYGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

XP_022957246.1 uncharacterized protein LOC111458689 [Cucurbita moschata]1.9e-6299.2Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAISGYGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

XP_022987454.1 uncharacterized protein LOC111484997 [Cucurbita maxima]7.8e-6197.6Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRR QKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAIS YGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

XP_023547360.1 uncharacterized protein LOC111806273 [Cucurbita pepo subsp. pepo]1.9e-6299.2Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAISGYGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

XP_038891854.1 50S ribosomal protein L18 isoform X1 [Benincasa hispida]1.8e-5792.74Show/hide
Query:  IQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDR
        IQARGNSKTESAK+ NRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYDR
Subjt:  IQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDR

Query:  NGFARGEKMQAFEIAISGYGFLQR
        NGFARGEKMQAFEIAIS YG LQR
Subjt:  NGFARGEKMQAFEIAISGYGFLQR

TrEMBL top hitse value%identityAlignment
A0A1S3BEE0 50S ribosomal protein L184.3e-5792Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP+ SCTTIEAAQHVGEELVK C +LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAIS YGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

A0A5A7ST92 50S ribosomal protein L184.3e-5792Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP+ SCTTIEAAQHVGEELVK C +LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAIS YGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

A0A5D3D244 50S ribosomal protein L184.3e-5792Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRR QKKYNG+ T+PRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRP+ SCTTIEAAQHVGEELVK C +LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAIS YGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

A0A6J1GYP6 uncharacterized protein LOC1114586899.0e-6399.2Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAISGYGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

A0A6J1JIY0 uncharacterized protein LOC1114849973.8e-6197.6Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        MIQARGNSKTESAKVRNRR QKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACE+LNIHEISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFLQR
        RNGFARGEKMQAFEIAIS YGFLQR
Subjt:  RNGFARGEKMQAFEIAISGYGFLQR

SwissProt top hitse value%identityAlignment
A9FGF8 50S ribosomal protein L182.5e-0938.89Show/hide
Query:  RNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS-PSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGF
        R  R +KK  G+  +PRLSVF S K +YA ++DD + K L + STL K ++ S      +EAA+ VG  + + C+   I ++  +DRNG+
Subjt:  RNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS-PSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGF

P04453 50S ribosomal protein L188.5e-1037.74Show/hide
Query:  SKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARG
        +KTE+ K R+ R + K  G++ +PRL+VF S+   YA ++DD     L   STL+  ++   S + I+AA+ V EEL K     NI+++  +DRNG+   
Subjt:  SKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARG

Query:  EKMQAF
         K++AF
Subjt:  EKMQAF

P82195 50S ribosomal protein L18, chloroplastic2.6e-1131.75Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEIS
        +IQA+ +++ E    R+ R +KK  G+  +PRL VF S+K LY  ++DD     L   ST+QK++  +    +  T+E AQ +GE + K+C    I ++ 
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEIS

Query:  SYDRNGFARGEKMQAFEIAISGYGFL
        ++DR G+    +++A   A   +G +
Subjt:  SYDRNGFARGEKMQAFEIAISGYGFL

Q8SAY0 50S ribosomal protein L18, chloroplastic1.5e-0937Show/hide
Query:  RNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQA
        R+ R +KK +G++ +PRLSVF S+K LYA ++DD     L   ST+ KS+       +  T+E AQ +GE + K+C    I ++  +DR GF    +++A
Subjt:  RNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKMQA

Q9SX68 50S ribosomal protein L18, chloroplastic7.7e-1133.06Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEIS
        +++A+  + +E    R+ R +KK NG++ +PRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+ VGE + K+C    I ++ 
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEIS

Query:  SYDRNGFARGEKMQAFEIAISGYG
        ++DR G+    +++A   A   +G
Subjt:  SYDRNGFARGEKMQAFEIAISGYG

Arabidopsis top hitse value%identityAlignment
AT1G14205.1 Ribosomal L18p/L5e family protein3.8e-4572.36Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD
        +I+ARGN++ ES K RNRR +KK+ G+ TKPRLSVFCSDKQLYAMLVDD NKKCLFY STLQKS+R  P CT IEAA+ VGEEL+KA  +L I+EISSYD
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYD

Query:  RNGFARGEKMQAFEIAISGYGFL
        RNG  RGE+MQAFEIAI+ +GFL
Subjt:  RNGFARGEKMQAFEIAISGYGFL

AT1G48350.1 Ribosomal L18p/L5e family protein5.5e-1233.06Show/hide
Query:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEIS
        +++A+  + +E    R+ R +KK NG++ +PRL VF S+K LY  ++DD     L   ST QK +       S  TIE A+ VGE + K+C    I ++ 
Subjt:  MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPS---PSCTTIEAAQHVGEELVKACENLNIHEIS

Query:  SYDRNGFARGEKMQAFEIAISGYG
        ++DR G+    +++A   A   +G
Subjt:  SYDRNGFARGEKMQAFEIAISGYG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAACAGGAGGTTCCAGAAAAAGTATAATGGCAGCTCTACAAAACCAAGGCTTTCAGTATTCTG
TTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCAAGTCCCTCATGCACCACCA
TCGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAAACTTGAACATACACGAAATATCATCTTACGATCGAAATGGATTTGCTCGTGGAGAGAAAATG
CAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAG
mRNA sequenceShow/hide mRNA sequence
TGCTGTCACAAGGAGGCCAAGTTGCCGGCGGGGAGAATTTCAACGGCACACACAGCCAAGCCACATTCATTCCGGCGGAACACTGACTAGACTGGTAGCTTCACGTAGCT
TACCGATGGTTTTTCTGCATTTCACTTAGCTAAAATCTTCTCTCCCAGGGATTGCGTGCAACGTGCTCGACGAAATTCCTGACTGACGAAGACCCTGTCGTACAACATAT
ATTGGGCATAAAAATCATTTCAAGAATGCCCTCTTTACCTCTCAATACAATAAATTTTGAAAAAGTTAATGGTGGCATGCATTTTCTAAATGTTCCTGGTCTGTTATCGA
AAACTCCTACCCCCTTCTGGTTCCAGTCAAAGCCATTTAACTTTCCCAGCTTGAAACGTAGACGTAAGTGAGTCAATACGTGCATTAGCTCCTAATCTGTATGATAATCT
ATGGTTCTGTTCTTGGACGATGTTGGACACAAACTGGCATATATCTATTATACCAATTACTGGAACCAGATGGATTTTGTTTTATAACGAATTCCTGCATTCCATGTAGA
TTGCGATGTGAAGCCGTTGATGATCCAAGCAAGAGGAAACTCTAAAACAGAAAGTGCAAAAGTTAGAAACAGGAGGTTCCAGAAAAAGTATAATGGCAGCTCTACAAAAC
CAAGGCTTTCAGTATTCTGTTCTGATAAGCAGTTGTATGCAATGCTGGTTGACGACCAGAACAAGAAGTGCCTGTTTTATGGAAGCACCTTACAGAAATCTATGCGTCCA
AGTCCCTCATGCACCACCATCGAAGCTGCTCAGCATGTTGGTGAAGAACTTGTGAAGGCATGTGAAAACTTGAACATACACGAAATATCATCTTACGATCGAAATGGATT
TGCTCGTGGAGAGAAAATGCAAGCCTTTGAAATTGCAATTTCGGGCTATGGGTTCTTGCAACGATAGATATATGCCAAGAACTAAGCCAAGTTGTAAATGTAAATGCCTG
TTATAATAACAAAGTCTGCTGTGTATCTCTTGTTAAAAGCCAAGCTGTCACGCCGGTGAGTGAATTATCGTTTGGACAATAAAACTCCGAGATACTCGATAGAAATCTAT
CGTTGATCAAATTTAATAG
Protein sequenceShow/hide protein sequence
MIQARGNSKTESAKVRNRRFQKKYNGSSTKPRLSVFCSDKQLYAMLVDDQNKKCLFYGSTLQKSMRPSPSCTTIEAAQHVGEELVKACENLNIHEISSYDRNGFARGEKM
QAFEIAISGYGFLQR