; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg14408 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14408
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationCarg_Chr18:8897594..8898676
RNA-Seq ExpressionCarg14408
SyntenyCarg14408
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573801.1 Protein LATERAL ROOT PRIMORDIUM 1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-15499.3Show/hide
Query:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
        MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSL+NLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
Subjt:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV

Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTSR
        CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST PAAASHASASIATTSR
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTSR

Query:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_022945608.1 protein SHI RELATED SEQUENCE 6-like [Cucurbita moschata]1.7e-156100Show/hide
Query:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
        MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
Subjt:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV

Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS
        CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS

Query:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_022967015.1 protein SHI RELATED SEQUENCE 6-like [Cucurbita maxima]1.9e-15097.22Show/hide
Query:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSL-PPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA
        MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSL PPPP PPPN+TAEEVSDRTRS ENLK+THDFGFGKGDSFIAGDKGDAGESSMA
Subjt:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSL-PPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA

Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTS
        VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST PAAASHASASIATTS
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTS

Query:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        RSFETTSNHQDASFKKSLPGQVR PAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_023541249.1 protein SHI RELATED SEQUENCE 6-like [Cucurbita pepo subsp. pepo]1.5e-15298.95Show/hide
Query:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
        MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSLPPPPQ PPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
Subjt:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV

Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTSR
        CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST PAAASHASASIATTSR
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTSR

Query:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  SFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

XP_038892899.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]1.9e-12380Show/hide
Query:  MLGLRDVLFLAPTS----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-
        MLGLRDVLF+APT           +SDHH SLPL S AALGVSVGIFPLL ATP L PPPQP PNQTA++V+DR+RSLENLK+T DFGFGKGDS + G  
Subjt:  MLGLRDVLFLAPTS----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-

Query:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
                KGDAG+ SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  STPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG
        ST AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VRAPAVFR HRVTAI+SGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+SG
Subjt:  STPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG

Query:  SHHRE
        +HHR+
Subjt:  SHHRE

TrEMBL top hitse value%identityAlignment
A0A0A0KWX6 Uncharacterized protein5.1e-12278.69Show/hide
Query:  MLGLRDVLFLAPTS----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-
        MLGLRDVLF+APT           +SDHH SLPL S  ALGVSVGIFPLLAATP LPP   PP N T ++V+DRTR+ +NLK+T DFGFGKG+S IAG  
Subjt:  MLGLRDVLFLAPTS----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-

Query:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
                KGDAG+ SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  STPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG
        S  AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VRAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+SG
Subjt:  STPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG

Query:  SHHRE
        +HHRE
Subjt:  SHHRE

A0A1S3BFS5 protein LATERAL ROOT PRIMORDIUM 11.5e-12178.36Show/hide
Query:  MLGLRDVLFLAPTS----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-
        MLGLRDVLF+APT           +SDHH SLPL S  ALGVSVGIFPLLAATP LPP   PP N T ++V+DRTR+ +NLK+T DFGFGKG+S I G  
Subjt:  MLGLRDVLFLAPTS----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD-

Query:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
                KGDAG+ SMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPA+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  STPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG
        S  AAA+ AS S ATT RSFETTS+HQDASFKKSLPG VRAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG  D KN +PS+SHLHL+SG
Subjt:  STPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESG

Query:  SHHRE
        +HHRE
Subjt:  SHHRE

A0A6J1CEG6 protein LATERAL ROOT PRIMORDIUM 12.6e-12178.96Show/hide
Query:  MLGLRDVLFLAPTS-----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD
        MLGLRDVLF+APT            +SDHH SLPL S AALGVSVGIFPLLAATP LP PP PPP   A EVS+R R ++NLK+T DFGFGKGDS IAG 
Subjt:  MLGLRDVLFLAPTS-----------TSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGD

Query:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
                +GDAG+SSM VCRDCGNRAKKEC+YRRCRTCCKGRGNHCSTHVKSTWV A+RRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ
Subjt:  --------KGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQ

Query:  STPAA----ASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLH
        ST AA    ASHAS S ATT RSFET+SNHQDASFKKSLPGQVRAPAVFR HRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG +D KNG+PS+SHLH
Subjt:  STPAA----ASHASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLH

Query:  LESGSHHRE
        LESG+HH +
Subjt:  LESGSHHRE

A0A6J1G1D4 protein SHI RELATED SEQUENCE 6-like8.4e-157100Show/hide
Query:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
        MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV
Subjt:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV

Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS
        CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS

Query:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

A0A6J1HT71 protein SHI RELATED SEQUENCE 6-like9.0e-15197.22Show/hide
Query:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSL-PPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA
        MLGLRDVLFLAPTSTSDHH SLPLHSPAALGVSVGIFPLLAATPSL PPPP PPPN+TAEEVSDRTRS ENLK+THDFGFGKGDSFIAGDKGDAGESSMA
Subjt:  MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSL-PPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMA

Query:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTS
        VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST PAAASHASASIATTS
Subjt:  VCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST-PAAASHASASIATTS

Query:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
        RSFETTSNHQDASFKKSLPGQVR PAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE
Subjt:  RSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 22.0e-3045.81Show/hide
Query:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPA
        D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M    + SG GG SGS  AG           S P 
Subjt:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPA

Query:  AASHASASIATTSRSFETTSNHQDASF-KKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG
           H   ++  TS S    S+       + S PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Subjt:  AASHASASIATTSRSFETTSNHQDASF-KKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.2e-4843.05Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG
        M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A       PQ     +        R  +N    H+     F   +    G
Subjt:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG

Query:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST
           +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q  
Subjt:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
           A+  +++  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH

Q9M2U4 Protein SHI RELATED SEQUENCE 66.2e-3244.39Show/hide
Query:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAAS
        D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                      SSS   ++ ++ I  QS+P  + 
Subjt:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAAS

Query:  HASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS
                      TT++ Q+  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH   +P LS
Subjt:  HASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS

Q9SD40 Protein SHI RELATED SEQUENCE 15.1e-2635.77Show/hide
Query:  HHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV-CRDCGNRAKKECEYRR
        H   L L+S AA G+ VG                 P N    ++S  T +          G G+  + +    G +G  S  V C+DCGN+AKK+C + R
Subjt:  HHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAV-CRDCGNRAKKECEYRR

Query:  CRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSL
        CRTCCK RG  CSTHV+STWVPA++RRERQ  +      T    G S        KR R  +P+ S+    +   +       +F               
Subjt:  CRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSL

Query:  PGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG
        P +V + AVFR  RV+++  GE E AYQ  V+IGGH+FKG LYD G
Subjt:  PGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQG

Q9XGX0 Protein SHORT INTERNODES3.9e-2644.64Show/hide
Query:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS
        C+DCGN++KK+C + RCRTCCK RG  C THVKSTWVPA++RRERQ       ++T        GS     KR R  IP++ST         S+A T   
Subjt:  CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRS

Query:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKN
           TS  +  +F    P +V + AVFR  RV+++   E E AY+  V+IGGHVFKG LYDQG  +  +
Subjt:  FETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKN

Arabidopsis top hitse value%identityAlignment
AT3G54430.1 SHI-related sequence 64.4e-3344.39Show/hide
Query:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAAS
        D    GE    VCRDCGNRAKKEC + RCRTCCK RG +C THVKSTW+P+S  R                      SSS   ++ ++ I  QS+P  + 
Subjt:  DKGDAGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAAS

Query:  HASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS
                      TT++ Q+  F++ LPG++ APAVF+  RVTAIS+ E  E+ YQATV I GH+FKGFL+  G VDH   +P LS
Subjt:  HASASIATTSRSFETTSNHQDASFKKSLPGQVRAPAVFRYHRVTAISSGE-GELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLS

AT4G36260.1 Lateral root primordium (LRP) protein-related1.4e-3145.81Show/hide
Query:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPA
        D  D   SS ++   CRDCGN+AKK+C + RCRTCCK RG  CSTHV+STW+P +RRRERQ  + M    + SG GG SGS  AG           S P 
Subjt:  DKGDAGESSMAV---CRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPA

Query:  AASHASASIATTSRSFETTSNHQDASF-KKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG
           H   ++  TS S    S+       + S PG+V + A+FR  +++ +   G+G+ AYQ TVNIGGH+FKG LYDQG
Subjt:  AASHASASIATTSRSFETTSNHQDASF-KKSLPGQVRAPAVFRYHRVTAI-SSGEGELAYQATVNIGGHVFKGFLYDQG

AT5G12330.1 Lateral root primordium (LRP) protein-related8.9e-5043.05Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG
        M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A       PQ     +        R  +N    H+     F   +    G
Subjt:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG

Query:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST
           +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q  
Subjt:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
           A+  +++  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH

AT5G12330.2 Lateral root primordium (LRP) protein-related8.9e-5043.05Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG
        M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A       PQ     +        R  +N    H+     F   +    G
Subjt:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG

Query:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST
           +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q  
Subjt:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
           A+  +++  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH

AT5G12330.4 Lateral root primordium (LRP) protein-related8.9e-5043.05Show/hide
Query:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG
        M+GLRDV  +AP          S SDH +S   ++ AA  + VG+ PLL A       PQ     +        R  +N    H+     F   +    G
Subjt:  MLGLRDVLFLAPT---------STSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHD---FGFGKGDSFIAG

Query:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST
           +     +G S  A C+DCGN+AKKEC+ RRCRTCCK RG  CSTHVKSTWV A+RRRERQ++        A+   GSS S+S+G K+PR++   Q  
Subjt:  DKGD-----AGESSMAVCRDCGNRAKKECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQST

Query:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS
           A+  +++  T  +SFET+S+ QD    +++ PGQVRA AVF+  RVTA+  G+ E AYQA V IGGHVFKGFLYDQG ++ K G+PS+S LHL   +
Subjt:  PAAASHASASIATTSRSFETTSNHQD-ASFKKSLPGQVRAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGS

Query:  HH
        ++
Subjt:  HH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATT
TCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAGACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGGAGAATCTGAAGAAAA
CCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAA
GAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGAT
GTTGGTGGTGATGGACGGCGTTGCCACTGCTAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTC
CCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTT
CGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTT
TCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGTCTCAGAGATGTTCTGTTTTTAGCTCCGACGTCTACTTCCGATCATCATTCTTCTCTTCCTCTCCACTCCCCCGCCGCTCTTGGTGTCAGCGTTGGCATATT
TCCACTTTTAGCGGCAACCCCATCTCTCCCGCCTCCTCCTCAGCCGCCGCCTAATCAGACGGCTGAGGAAGTTAGTGATCGTACTCGGAGTTTGGAGAATCTGAAGAAAA
CCCATGATTTTGGGTTTGGGAAAGGGGATTCGTTTATTGCCGGCGACAAAGGCGACGCCGGCGAGAGCTCCATGGCGGTTTGTAGGGACTGTGGAAACAGAGCTAAAAAA
GAGTGTGAGTATCGGAGGTGCAGGACTTGTTGTAAAGGACGTGGGAATCATTGCTCTACTCATGTGAAGAGTACTTGGGTTCCGGCGTCTCGCCGCCGTGAACGTCAGAT
GTTGGTGGTGATGGACGGCGTTGCCACTGCTAGTGGCGACGGTGGTTCTTCTGGTTCTTCGTCTGCTGGTGCTAAAAGACCCAGAGTTTTGATTCCTTCGCAGAGTACTC
CCGCCGCCGCCTCTCACGCTTCTGCCTCCATTGCCACCACCTCCAGGAGCTTTGAAACAACCTCCAACCATCAAGATGCAAGCTTCAAGAAGTCGCTACCGGGGCAAGTT
CGTGCCCCGGCGGTGTTCCGGTACCATAGAGTGACAGCCATTAGCAGTGGTGAAGGAGAGTTAGCATACCAAGCAACAGTCAACATTGGTGGCCATGTCTTCAAAGGCTT
TCTGTATGATCAAGGAGTTGTTGATCACAAAAATGGATACCCATCTCTTTCACATCTCCATTTGGAAAGTGGTAGCCATCACAGGGAATAG
Protein sequenceShow/hide protein sequence
MLGLRDVLFLAPTSTSDHHSSLPLHSPAALGVSVGIFPLLAATPSLPPPPQPPPNQTAEEVSDRTRSLENLKKTHDFGFGKGDSFIAGDKGDAGESSMAVCRDCGNRAKK
ECEYRRCRTCCKGRGNHCSTHVKSTWVPASRRRERQMLVVMDGVATASGDGGSSGSSSAGAKRPRVLIPSQSTPAAASHASASIATTSRSFETTSNHQDASFKKSLPGQV
RAPAVFRYHRVTAISSGEGELAYQATVNIGGHVFKGFLYDQGVVDHKNGYPSLSHLHLESGSHHRE