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Carg14412 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14412
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionTranscription factor IIIA
Genome locationCarg_Chr18:8853913..8855631
RNA-Seq ExpressionCarg14412
SyntenyCarg14412
Gene Ontology termsNA
InterPro domainsIPR013087 - Zinc finger C2H2-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3453539.1 transcription factor IIIA-like isoform X1 [Gossypium australe]4.2e-1189.74Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        SN C ECGA+FKKPAYLKQH+QSHSLEYQVGRPPEKLHQ
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
KAG6573793.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]7.7e-21100Show/hide
Query:  RKSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQGPHSRYYSSR
        RKSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQGPHSRYYSSR
Subjt:  RKSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQGPHSRYYSSR
KAG7012871.1 hypothetical protein SDJN02_25624, partial [Cucurbita argyrosperma subsp. argyrosperma]5.3e-62100Show/hide
Query:  MKKPTIQYELPVISEEKESGRATQLGAESHHSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRKSNICLECGAAFKKPAYLKQHMQSHSLEYQVG
        MKKPTIQYELPVISEEKESGRATQLGAESHHSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRKSNICLECGAAFKKPAYLKQHMQSHSLEYQVG
Subjt:  MKKPTIQYELPVISEEKESGRATQLGAESHHSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRKSNICLECGAAFKKPAYLKQHMQSHSLEYQVG

Query:  RPPEKLHQGPHSRYYSSRFEVE
        RPPEKLHQGPHSRYYSSRFEVE
Subjt:  RPPEKLHQGPHSRYYSSRFEVE
KAG8493529.1 hypothetical protein CXB51_011055 [Gossypium anomalum]4.2e-1189.74Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        SN C ECGA+FKKPAYLKQH+QSHSLEYQVGRPPEKLHQ
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
MBA0624212.1 hypothetical protein [Gossypium davidsonii]4.2e-1189.74Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        SN C ECGA+FKKPAYLKQH+QSHSLEYQVGRPPEKLHQ
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
TrEMBL top hitse value%identityAlignment
A0A2P5DHF8 TFIIH C1-like domain containing protein1.7e-1080.95Show/hide
Query:  LRKSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        ++ SN C ECG  FKKPAYLKQHMQSHS EYQVGRPPEKLHQ
Subjt:  LRKSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
A0A2P5XHF7 Uncharacterized protein2.1e-1189.74Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        SN C ECGA+FKKPAYLKQH+QSHSLEYQVGRPPEKLHQ
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
A0A5B6U6S8 Transcription factor IIIA-like isoform X12.1e-1189.74Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        SN C ECGA+FKKPAYLKQH+QSHSLEYQVGRPPEKLHQ
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
A0A6N2LV30 Uncharacterized protein1.3e-1085Show/hide
Query:  KSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        KSN C +CGA+FKKPAYL QHMQSHSLEYQ GRPPEKLHQ
Subjt:  KSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
A0A7J8SFE1 Uncharacterized protein2.1e-1189.74Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
        SN C ECGA+FKKPAYLKQH+QSHSLEYQVGRPPEKLHQ
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQ
SwissProt top hitse value%identityAlignment
Q84MZ4 Transcription factor IIIA3.6e-0577.78Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLE
        ++ C ECGA FKKPA+LKQHMQSHSLE
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLE
Arabidopsis top hitse value%identityAlignment
AT1G72050.2 transcription factor IIIA2.6e-0677.78Show/hide
Query:  SNICLECGAAFKKPAYLKQHMQSHSLE
        ++ C ECGA FKKPA+LKQHMQSHSLE
Subjt:  SNICLECGAAFKKPAYLKQHMQSHSLE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAAGCCCACTATCCAGTATGAGCTTCCGGTTATTTCGGAGGAAAAGGAAAGCGGCCGAGCAACACAGCTGGGAGCTGAATCACACCATTCTTGCAGCACAGCCCC
TTCCTTTTTTTCTCTTGTTGCCGCCGTCGCTCGCCGGAAAGTCACCATCACCTTCTGCTGTGGCCCTTTATCCATCTCTTGCTCATTCTTAAGAAAATCCAATATTTGCC
TCGAATGTGGCGCTGCTTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTCGAGTATCAGGTTGGGAGACCTCCTGAGAAGCTCCATCAGGGGCCT
CACTCACGCTACTATAGTTCGAGGTTTGAAGTCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAAGCCCACTATCCAGTATGAGCTTCCGGTTATTTCGGAGGAAAAGGAAAGCGGCCGAGCAACACAGCTGGGAGCTGAATCACACCATTCTTGCAGCACAGCCCC
TTCCTTTTTTTCTCTTGTTGCCGCCGTCGCTCGCCGGAAAGTCACCATCACCTTCTGCTGTGGCCCTTTATCCATCTCTTGCTCATTCTTAAGAAAATCCAATATTTGCC
TCGAATGTGGCGCTGCTTTCAAAAAGCCTGCTTACTTGAAGCAACATATGCAAAGCCATTCGCTCGAGTATCAGGTTGGGAGACCTCCTGAGAAGCTCCATCAGGGGCCT
CACTCACGCTACTATAGTTCGAGGTTTGAAGTCGAGTAA
Protein sequenceShow/hide protein sequence
MKKPTIQYELPVISEEKESGRATQLGAESHHSCSTAPSFFSLVAAVARRKVTITFCCGPLSISCSFLRKSNICLECGAAFKKPAYLKQHMQSHSLEYQVGRPPEKLHQGP
HSRYYSSRFEVE