CuGenDBv2

Gene ID	Carg14427
Organism	Cucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
Description	ferredoxin-thioredoxin reductase, variable chain-like
Genome location	Carg_Chr18:8731596..8732144
RNA-Seq Expression	Carg14427
Synteny	Carg14427
Gene Ontology terms	GO:0015979 - photosynthesis (biological process) GO:0016310 - phosphorylation (biological process) GO:0030148 - sphingolipid biosynthetic process (biological process) GO:0003951 - NAD+ kinase activity (molecular function) GO:0017050 - D-erythro-sphingosine kinase activity (molecular function)
InterPro domains	IPR004207 - Ferredoxin thioredoxin reductase, alpha chain IPR008990 - Electron transport accessory-like domain superfamily IPR044166 - Ferredoxin-thioredoxin reductase, variable chain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004147092.1 ferredoxin-thioredoxin reductase, variable chain [Cucumis sativus]

1.3e-67

82.42

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIA+S+GVIPSP  +SAS AAR ACS+T  ST+ DVKSS+SSSV SLSS+V NPFNC IRRGRR+ SEV V+SDS  SSSAT VSAA TSLSEEET E
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAA RIGA+VRVKVPLKVYHVAKLP+ANLEGMEGV+KDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKE+EFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

XP_022945181.1 ferredoxin-thioredoxin reductase, variable chain-like [Cucurbita moschata]

1.2e-86

100

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

XP_022967006.1 ferredoxin-thioredoxin reductase, variable chain-like [Cucurbita maxima]

1.8e-82

96.15

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIASSVGVIPSPVTASASAA+RP CS+ TV+TSVDVKSSYSSSVSSLSSVVANPFNCLI RGRR+CSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

XP_023523040.1 ferredoxin-thioredoxin reductase, variable chain-like [Cucurbita pepo subsp. pepo]

2.1e-83

96.7

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIASSVGVIPSPVTASASA ARPACS+T VSTSVDVKSSYSSSVSSLSSVVANPFN LIRRGRR+CSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGV+KDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

XP_038893043.1 ferredoxin-thioredoxin reductase, variable chain-like [Benincasa hispida]

4.3e-68

82.97

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIA+S+GVIP+P  +SASAAAR ACS+T  S + DVKSSYSSSV SLSSVV NPFNC IRRGRR+ SEV V+SDS  S SAT VSAA TSLSEEET E
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAA RIGA+VRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKE+EFEY+
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KV36 FeThRed_A domain-containing protein

6.1e-68

82.42

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIA+S+GVIPSP  +SAS AAR ACS+T  ST+ DVKSS+SSSV SLSS+V NPFNC IRRGRR+ SEV V+SDS  SSSAT VSAA TSLSEEET E
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAA RIGA+VRVKVPLKVYHVAKLP+ANLEGMEGV+KDYVRVWKGK VSANLPYKVEFVVPVEGRPPVKFVAHLKE+EFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

A0A1S3BEI2 ferredoxin-thioredoxin reductase, variable chain

6.1e-68

81.87

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MI IA+S+G++P PV +SAS AAR ACS+T  STS DV+SS+SSSV SLSSVV NPFNC IRRGRR+ SEV+V+SDS  SSSAT VSAA TSLSEEET E
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAA RIGA+VRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPP+KFVAHLKE+EFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

A0A5D3D039 Sphingoid long-chain bases kinase 1

6.1e-68

81.87

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MI IA+S+G++P PV +SAS AAR ACS+T  STS DV+SS+SSSV SLSSVV NPFNC IRRGRR+ SEV+V+SDS  SSSAT VSAA TSLSEEET E
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAA RIGA+VRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGK VSANLPYKVEFVVPVEGRPP+KFVAHLKE+EFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

A0A6J1G052 ferredoxin-thioredoxin reductase, variable chain-like

5.8e-87

100

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

A0A6J1HQV7 ferredoxin-thioredoxin reductase, variable chain-like

8.7e-83

96.15

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Query:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
        MISIASSVGVIPSPVTASASAA+RP CS+ TV+TSVDVKSSYSSSVSSLSSVVANPFNCLI RGRR+CSEVTVKSDSRGSSSATVVSAAATSLSEEETGE
Subjt:  MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGE

Query:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
Subjt:  AAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

SwissProt top hits

e value

%identity

Alignment

P38365 Ferredoxin-thioredoxin reductase, variable chain, chloroplastic

1.1e-18

39.66

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Query:  TASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNC-LIRRGR-----RICSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAK
        T  A  ++  A S  T + +   +     S ++ S+ V +   C  I R R      IC EV +KSD    SS    S++++   E+E  +    ++G K
Subjt:  TASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNC-LIRRGR-----RICSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAK

Query:  VRVKVPLKVYHVAKLPEANL-EGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        V+VK PLKVYHV KLPE  L   M GV+K YV  WKGK++S N P+KVE+ + V  R  VK V HLKE+EFE +
Subjt:  VRVKVPLKVYHVAKLPEANL-EGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

P80680 Ferredoxin-thioredoxin reductase, variable chain

1.2e-23

58.95

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Query:  AATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRP-PVKFVAHLKEDEFEYV
        A+  ++ EE   AAA +IG +VRV  PL+VYHV K P+ +++GMEGV+K YV VWKGK V+AN P+KVEF + VEG+P PV+F AHL+EDEFE+V
Subjt:  AATSLSEEETGEAAATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRP-PVKFVAHLKEDEFEYV

Arabidopsis top hits

e value

%identity

Alignment

AT5G08410.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2

1.8e-27

46.24

Show/hide

Query:  AAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICS--------EVTVKSDSRGSSSATVVSAAATSLS---EEETGEAAATRIGAK
        AA RP  S   +   V    S   S++S SS +  P +     GR  C+        + T++ D    S+A+V + A  S S   E E  E A  +IGA+
Subjt:  AAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICS--------EVTVKSDSRGSSSATVVSAAATSLS---EEETGEAAATRIGAK

Query:  VRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
        VRV VPLKVYHV ++PE  L GMEG +KDYV +WKGK +SANLP+KV+FV  +EGR PVKF  HLKEDEFE +
Subjt:  VRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

AT5G23440.1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1

3.3e-26

44.44

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Query:  SIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAA
        +IA+++    S    SASA    A  +   S  V   S ++S      S         IR    I S  ++ +D+  SSS +         SEEE    A
Subjt:  SIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAA

Query:  ATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV
          +IG++VRV  PLKVYHV ++PE +LEGMEG LKDYV VWKGK +SANLPYK+EF   +EGR  VKFV+HLKEDEFE++
Subjt:  ATRIGAKVRVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATCAGTATTGCAAGCAGTGTCGGCGTGATACCATCGCCGGTGACGGCGTCAGCGTCGGCGGCCGCTCGTCCCGCCTGTTCTATTACGACGGTGTCCACTAGTGTTGA
TGTCAAATCGTCCTATTCCTCGTCCGTTAGTTCTCTATCGTCAGTTGTTGCTAATCCTTTCAACTGCTTGATTAGAAGAGGGAGGAGAATTTGTAGCGAGGTTACAGTCA
AATCAGATTCCAGAGGTTCCTCTTCTGCTACTGTTGTTTCGGCGGCGGCGACGTCATTGTCTGAGGAGGAGACTGGCGAAGCGGCTGCTACTAGAATTGGAGCGAAAGTT
AGGGTTAAGGTACCTTTGAAGGTGTATCATGTAGCGAAGTTGCCGGAGGCGAATCTTGAGGGGATGGAAGGAGTGCTGAAGGACTATGTACGCGTTTGGAAGGGGAAACA
CGTTTCTGCTAATCTTCCGTATAAGGTGGAGTTTGTTGTTCCGGTTGAAGGCCGGCCTCCGGTCAAATTCGTCGCTCATCTGAAGGAGGATGAATTTGAATACGTTTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MISIASSVGVIPSPVTASASAAARPACSITTVSTSVDVKSSYSSSVSSLSSVVANPFNCLIRRGRRICSEVTVKSDSRGSSSATVVSAAATSLSEEETGEAAATRIGAKV
RVKVPLKVYHVAKLPEANLEGMEGVLKDYVRVWKGKHVSANLPYKVEFVVPVEGRPPVKFVAHLKEDEFEYV

Carg14427 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome