; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Carg14502 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14502
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionRING-type domain-containing protein
Genome locationCarg_Chr18:8185083..8185990
RNA-Seq ExpressionCarg14502
SyntenyCarg14502
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR044249 - Probable E3 ubiquitin-protein ligase XERICO-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012781.1 hypothetical protein SDJN02_25534, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-66100Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEVSELSWALERVGLKGDCSRALEEEVLGEAL
        EADEEVSELSWALERVGLKGDCSRALEEEVLGEAL
Subjt:  EADEEVSELSWALERVGLKGDCSRALEEEVLGEAL

XP_022945499.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita moschata]1.8e-5099.09Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGR RRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEVSELS
        EADEEVSELS
Subjt:  EADEEVSELS

XP_022966845.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita maxima]2.3e-5097.27Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG+GRRISITHFKSLRQSFNGGTET+NCSVSRC+VAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEVSELS
        EADEEVSELS
Subjt:  EADEEVSELS

XP_023523084.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]2.5e-3680.36Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR RRISIT FKSL QSFN G  T+  S SRC++AEC VCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC

Query:  GFEADEEVSELS
        GFEADEEVSELS
Subjt:  GFEADEEVSELS

XP_023541596.1 probable E3 ubiquitin-protein ligase XERICO [Cucurbita pepo subsp. pepo]1.3e-5098.18Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSS DEYEQESGRGRRISITHFKSLRQSFNGGTET+NCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEVSELS
        EADEEVSELS
Subjt:  EADEEVSELS

TrEMBL top hitse value%identityAlignment
A0A6J1DFU2 probable E3 ubiquitin-protein ligase XERICO5.9e-3678.07Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMM----SANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC
        MGLSNFPP AEGVLLLPVL+MNTVMSMAFLK+LVRSV+QMM    SA+PSSS +EY+ E+ R RRISIT FKSLRQSFNGGTE  + S SRC  AEC VC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMM----SANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC

Query:  LCGFEADEEVSELS
        LCGFEADEEVSELS
Subjt:  LCGFEADEEVSELS

A0A6J1G151 probable E3 ubiquitin-protein ligase XERICO8.5e-5199.09Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGR RRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEVSELS
        EADEEVSELS
Subjt:  EADEEVSELS

A0A6J1GZI7 probable E3 ubiquitin-protein ligase XERICO7.7e-3680.36Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E + E+GR RRISIT FKSL QSFN G  T+  S SRC +AEC VCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC

Query:  GFEADEEVSELS
        GFEADEEVSELS
Subjt:  GFEADEEVSELS

A0A6J1HSQ5 probable E3 ubiquitin-protein ligase XERICO1.1e-5097.27Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESG+GRRISITHFKSLRQSFNGGTET+NCSVSRC+VAECSVCLCGF
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGF

Query:  EADEEVSELS
        EADEEVSELS
Subjt:  EADEEVSELS

A0A6J1J1V9 probable E3 ubiquitin-protein ligase XERICO2.7e-3680.36Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC
        MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSV+QMMSA  NPSSS +E++ E+GR RRISIT FKSL QSFN G  T+  S SRC +AEC VCLC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSA--NPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLC

Query:  GFEADEEVSELS
        GFEADEEVSELS
Subjt:  GFEADEEVSELS

SwissProt top hitse value%identityAlignment
Q9SI09 Probable E3 ubiquitin-protein ligase XERICO1.2e-0432.23Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRGRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S      S      +   +S  + F   T T      C   + 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRGRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC

Query:  SVAECSVCLCGFEADEEVSEL
        +  ECSVCL  F+ D E+++L
Subjt:  SVAECSVCLCGFEADEEVSEL

Arabidopsis top hitse value%identityAlignment
AT1G24580.1 RING/U-box superfamily protein5.0e-1145.05Show/hide
Query:  MNTVMSMAFLKNLVRSVLQMMSANPSSS--ADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSEL
        MNTV+S+  LKN+VRSV Q++++   SS   D+  ++    RRISIT FKSL ++     E            EC VCLCGF+ +EEVSEL
Subjt:  MNTVMSMAFLKNLVRSVLQMMSANPSSS--ADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSEL

AT1G67856.1 RING/U-box superfamily protein1.6e-1745.13Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSA----DEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC
        MG+S++P ++EGV  +P+LVMNTV+S++ +KN+VRSV+ M+S+  + +     D+  ++S R RRISITHF+SL +  N G+  +          +C VC
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSA----DEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVC

Query:  LCGFEADEEVSEL
        LCGF+ +EEVSEL
Subjt:  LCGFEADEEVSEL

AT2G04240.1 RING/U-box superfamily protein8.3e-0632.23Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRGRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S      S      +   +S  + F   T T      C   + 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRGRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC

Query:  SVAECSVCLCGFEADEEVSEL
        +  ECSVCL  F+ D E+++L
Subjt:  SVAECSVCLCGFEADEEVSEL

AT2G04240.2 RING/U-box superfamily protein8.3e-0632.23Show/hide
Query:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRGRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC
        MGLS+ P  +EG+L   V+++NT +S++ +K +VRS L +  +S +PSSS+      S      S      +   +S  + F   T T      C   + 
Subjt:  MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQM--MSANPSSSADEYEQESGRGRRIS------ITHFKSLRQSFNGGTET----DNCSVSRC

Query:  SVAECSVCLCGFEADEEVSEL
        +  ECSVCL  F+ D E+++L
Subjt:  SVAECSVCLCGFEADEEVSEL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGT
GCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCT
TCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCT
TGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTCTCTCAAATTTCCCCCCGTCAGCTGAAGGAGTGTTGCTGTTACCAGTTCTAGTGATGAACACAGTCATGTCGATGGCTTTCTTGAAGAACTTGGTGAGATCTGT
GCTACAAATGATGAGCGCCAACCCCTCGAGTTCTGCGGATGAATATGAACAGGAGAGTGGAAGAGGAAGAAGAATCTCCATTACCCATTTCAAATCCTTACGCCAAAGCT
TCAATGGCGGAACAGAGACTGATAATTGCTCTGTTTCGAGGTGTTCTGTGGCAGAGTGCTCTGTTTGTCTGTGTGGATTTGAAGCTGACGAGGAAGTTAGTGAGTTGTCT
TGGGCTTTAGAAAGAGTCGGATTGAAGGGAGATTGTTCAAGAGCTTTAGAGGAGGAGGTCTTAGGGGAGGCTCTATGA
Protein sequenceShow/hide protein sequence
MGLSNFPPSAEGVLLLPVLVMNTVMSMAFLKNLVRSVLQMMSANPSSSADEYEQESGRGRRISITHFKSLRQSFNGGTETDNCSVSRCSVAECSVCLCGFEADEEVSELS
WALERVGLKGDCSRALEEEVLGEAL