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Carg14606 (gene) of Silver-seed gourd (SMH-JMG-627) v2 genome

Gene IDCarg14606
OrganismCucurbita argyrosperma subsp. argyrosperma cv. SMH-JMG-627 (Silver-seed gourd (SMH-JMG-627) v2)
DescriptionPentatricopeptide repeat-containing protein
Genome locationCarg_Chr18:2268893..2271296
RNA-Seq ExpressionCarg14606
SyntenyCarg14606
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7012455.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-100100Show/hide
Query:  METKGCSPSVVTYTSMIHGLCAMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVKPCELPLAWDSMVVGVGGPHYAVMCLSLARNSQ
        METKGCSPSVVTYTSMIHGLCAMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVKPCELPLAWDSMVVGVGGPHYAVMCLSLARNSQ
Subjt:  METKGCSPSVVTYTSMIHGLCAMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVKPCELPLAWDSMVVGVGGPHYAVMCLSLARNSQ

Query:  DLCNGPSLWLANIVILALSLSDFPSRAQRLRQHSFLSSISMGSHNLSKRVLRSPPQLMWDLTIHPPSGPNVFTSTRSSLQSL
        DLCNGPSLWLANIVILALSLSDFPSRAQRLRQHSFLSSISMGSHNLSKRVLRSPPQLMWDLTIHPPSGPNVFTSTRSSLQSL
Subjt:  DLCNGPSLWLANIVILALSLSDFPSRAQRLRQHSFLSSISMGSHNLSKRVLRSPPQLMWDLTIHPPSGPNVFTSTRSSLQSL

KAG7019600.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-2175.71Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        ME KGCSPSV+TYTSMIHGLC       AM +LEDMM KGI PNVFTYS+L+DGFCKAGHSL+ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

XP_022927208.1 pentatricopeptide repeat-containing protein At5g46100 [Cucurbita moschata]8.8e-2175.71Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        ME KGCSPSV+TYTSMIHGLC       AM +LEDMM KGI PNVFTYS+L+DGFCKAGHSL+ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

XP_023001715.1 pentatricopeptide repeat-containing protein At5g46100 [Cucurbita maxima]6.7e-2177.14Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        ME KGCSPSVVTYTSMIHGLC       AM +LEDMM KGI PNVFTYS+L+DGFCKAGHSL+ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

XP_023519166.1 pentatricopeptide repeat-containing protein At5g46100 [Cucurbita pepo subsp. pepo]8.8e-2175.71Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        ME KGCSPSV+TYTSMIHGLC       AM +LEDMM KGI PNVFTYS+L+DGFCKAGHSL+ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

TrEMBL top hitse value%identityAlignment
A0A0A0LRZ4 Uncharacterized protein1.2e-1870Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        METKGCSPSVVTYTS+IHGLC       AM++LEDM  K I PNVFTYS+L+DGFCK GHS +ARD+LE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

A0A6J1CDW1 pentatricopeptide repeat-containing protein At5g46100 isoform X17.3e-2175.71Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        METKGCSPSVVTYTS+IHGLC       A+ +LEDMMGKGI PNVFTYS+L+DGFCKAGHS +ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

A0A6J1CF14 pentatricopeptide repeat-containing protein At5g46100 isoform X27.3e-2175.71Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        METKGCSPSVVTYTS+IHGLC       A+ +LEDMMGKGI PNVFTYS+L+DGFCKAGHS +ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

A0A6J1EKD3 pentatricopeptide repeat-containing protein At5g461004.3e-2175.71Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        ME KGCSPSV+TYTSMIHGLC       AM +LEDMM KGI PNVFTYS+L+DGFCKAGHSL+ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

A0A6J1KLZ3 pentatricopeptide repeat-containing protein At5g461003.3e-2177.14Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV
        ME KGCSPSVVTYTSMIHGLC       AM +LEDMM KGI PNVFTYS+L+DGFCKAGHSL+ARDLLE+
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEV

SwissProt top hitse value%identityAlignment
Q0WVK7 Pentatricopeptide repeat-containing protein At1g05670, mitochondrial2.8e-0945.31Show/hide
Query:  GCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLL
        GCSP+VVTYT++I GLC       A ++L +M   G+ PN+FTY+++V+G CK+G+  +A  L+
Subjt:  GCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLL

Q3ECK2 Pentatricopeptide repeat-containing protein At1g62680, mitochondrial1.1e-1047.83Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE
        +E KG  P+VVTYT++++GLC       A ++L DM+ K I PNV TYS L+D F K G  L+A++L E
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE

Q9FLL3 Pentatricopeptide repeat-containing protein At5g41170, mitochondrial2.8e-0942.31Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP
        METKGC P VV YTS+I+G C       AM++  +M  KG+  N  TY+TL+ GF + G    A+++    V+ GV P
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP

Q9FNL2 Pentatricopeptide repeat-containing protein At5g461006.8e-1656.41Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP
        M  K C+P+VVTYTS+I+GLC       AM+ LE+M  KGI PNVFTYS+L+DG CK G SLQA +L E  +A G +P
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP

Q9M9X9 Pentatricopeptide repeat-containing protein At1g06710, mitochondrial2.8e-0941.33Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVK
        M   GC+P+VVTYT++IH          A ++ E M+ +G  PN+ TYS L+DG CKAG   +A  + E   G K
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVK

Arabidopsis top hitse value%identityAlignment
AT1G06710.1 Tetratricopeptide repeat (TPR)-like superfamily protein2.0e-1041.33Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVK
        M   GC+P+VVTYT++IH          A ++ E M+ +G  PN+ TYS L+DG CKAG   +A  + E   G K
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVK

AT1G62680.1 Pentatricopeptide repeat (PPR) superfamily protein8.0e-1247.83Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE
        +E KG  P+VVTYT++++GLC       A ++L DM+ K I PNV TYS L+D F K G  L+A++L E
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE

AT1G63630.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-1141.03Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP
        M +KGCSP VVT++++I+G C        M++  +M  +GI  N  TY+TL+ GFC+ G    A+DLL   ++ GV P
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP

AT1G63630.2 Tetratricopeptide repeat (TPR)-like superfamily protein8.8e-1141.03Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP
        M +KGCSP VVT++++I+G C        M++  +M  +GI  N  TY+TL+ GFC+ G    A+DLL   ++ GV P
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP

AT5G46100.1 Pentatricopeptide repeat (PPR) superfamily protein4.8e-1756.41Show/hide
Query:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP
        M  K C+P+VVTYTS+I+GLC       AM+ LE+M  KGI PNVFTYS+L+DG CK G SLQA +L E  +A G +P
Subjt:  METKGCSPSVVTYTSMIHGLC-------AMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLE--VAFGVKP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATGCAAGTACTTGAAGATATGATGGGCAAGGGTATTGCACCCAA
TGTATTTACTTACAGTACCCTAGTGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGAGACCTCTTGGAGGTAGCTTTTGGAGTAAAGCCATGCGAATTGCCTC
TTGCATGGGACTCAATGGTAGTGGGAGTTGGAGGCCCTCATTATGCAGTCATGTGCCTCTCCCTTGCAAGGAACTCTCAAGATCTTTGTAATGGCCCAAGCCTATGGCTA
GCAAATATTGTCATCTTAGCGCTTTCTCTTTCGGATTTCCCTTCAAGGGCCCAACGTCTTCGCCAGCATTCGTTCCTCTCTTCAATCTCTATGGGATCTCACAATCTTTC
TAAAAGGGTGCTTCGTTCTCCTCCTCAACTGATGTGGGACCTCACAATCCACCCTCCTTCAGGGCCCAACGTCTTCACTAGCACTCGTTCCTCTCTGCAATCACTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGACTAAAGGTTGCTCACCTTCTGTTGTTACCTATACATCAATGATACATGGTTTGTGTGCAATGCAAGTACTTGAAGATATGATGGGCAAGGGTATTGCACCCAA
TGTATTTACTTACAGTACCCTAGTGGATGGATTTTGCAAGGCTGGCCATTCTTTGCAAGCTAGAGACCTCTTGGAGGTAGCTTTTGGAGTAAAGCCATGCGAATTGCCTC
TTGCATGGGACTCAATGGTAGTGGGAGTTGGAGGCCCTCATTATGCAGTCATGTGCCTCTCCCTTGCAAGGAACTCTCAAGATCTTTGTAATGGCCCAAGCCTATGGCTA
GCAAATATTGTCATCTTAGCGCTTTCTCTTTCGGATTTCCCTTCAAGGGCCCAACGTCTTCGCCAGCATTCGTTCCTCTCTTCAATCTCTATGGGATCTCACAATCTTTC
TAAAAGGGTGCTTCGTTCTCCTCCTCAACTGATGTGGGACCTCACAATCCACCCTCCTTCAGGGCCCAACGTCTTCACTAGCACTCGTTCCTCTCTGCAATCACTATAG
Protein sequenceShow/hide protein sequence
METKGCSPSVVTYTSMIHGLCAMQVLEDMMGKGIAPNVFTYSTLVDGFCKAGHSLQARDLLEVAFGVKPCELPLAWDSMVVGVGGPHYAVMCLSLARNSQDLCNGPSLWL
ANIVILALSLSDFPSRAQRLRQHSFLSSISMGSHNLSKRVLRSPPQLMWDLTIHPPSGPNVFTSTRSSLQSL